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hallamlab
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metapathways2
MetaPathways v2.0: A master-worker model for environmental Pathway/Genome Database construction on grids and clouds
http://hallam.microbiology.ubc.ca/MetaPathways/
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Feature Request: Provide Contig-wide and Pathway-wide LCA values
#53
taltman
closed
7 years ago
1
Selecting steps as 'redo' or 'yes' silently ignored
#52
taltman
closed
7 years ago
1
Add documentation on how to build CAZy database
#51
taltman
closed
7 years ago
4
Complete GreenGenes download documentation
#50
taltman
closed
7 years ago
0
Complete SEED DB download documentation
#49
taltman
closed
7 years ago
0
LCAStar feature documented, but not visible in GUI, flatfiles
#48
taltman
closed
9 years ago
3
Results tab: Unlabeled GUI elements are confusing
#47
taltman
closed
7 years ago
1
Results Tab has Amnesia
#46
taltman
closed
9 years ago
2
"Need to remove the redundancy" echoed to terminal
#45
taltman
closed
7 years ago
1
MetaPathways must include version numbers for bundled programs in release notes
#44
taltman
closed
7 years ago
1
template_param.txt Comments
#43
taltman
closed
7 years ago
1
File location and GUI visualisation
#42
rpelicae
closed
7 years ago
3
Command line not working
#41
taltman
closed
9 years ago
4
ERROR lastal: the lastdb files are old: please re-run lastdb
#40
taltman
closed
7 years ago
9
GUI 'Run' tab Error Log entries are not sorted
#39
taltman
closed
7 years ago
1
Multifunctional enzymes with more than one EC number not parsed correctly
#38
taltman
closed
7 years ago
2
Annotate PF files with source of annotation
#37
taltman
closed
7 years ago
1
GUI, docs don't explain why input files not found
#36
taltman
closed
7 years ago
1
Unclear how MP2 maps from RefSeq complete proteins to taxonomy
#35
taltman
closed
7 years ago
3
BLAST search does not work
#34
taltman
closed
9 years ago
2
Unpredictable X-windowing system error when launching MP2 from Ubuntu command-line
#33
taltman
closed
7 years ago
1
LAST raw results do not make it into {DB}.parsed.txt files
#32
taltman
closed
7 years ago
24
metapathways_run_log.txt is empty
#31
taltman
closed
7 years ago
1
MP reports "Success" when run log reports PathoLogic error
#30
taltman
closed
7 years ago
1
Canceling MP run doesn't cancel Pathway Tools
#29
taltman
closed
7 years ago
1
Feature Request: Support M5NR
#28
taltman
closed
7 years ago
1
Stale GreenGenes link
#27
taltman
closed
7 years ago
1
Default tab in GUI is Parameter
#26
taltman
closed
7 years ago
1
template_config.txt & yourOS
#25
taltman
closed
7 years ago
1
Field names unclear in Setup tab of GUI
#24
taltman
closed
7 years ago
1
Typo on 'Setup' tab in GUI
#23
taltman
closed
7 years ago
1
Explicitly state which DBs are bundled, vs. not bundled
#22
taltman
closed
7 years ago
1
Docs should be bundled in the download files
#21
taltman
closed
7 years ago
1
Documentation provides no guidance on input files
#20
taltman
closed
7 years ago
1
MP2.5 happily creates PGDB with zero genes, zero pathways
#19
taltman
closed
7 years ago
4
libGL error on Ubuntu upon GUI start-up
#18
taltman
closed
7 years ago
1
Skipping [NO INPUT]!
#17
sunitj
closed
9 years ago
2
Incompatibility with RHEL 6.5
#16
sunitj
closed
7 years ago
1
Dropbox link for Python codebase broken
#15
sunitj
closed
9 years ago
5
Add WTD to predicted MetaCyc pathways.
#14
nielshanson
closed
9 years ago
1
template_config not recognizing operating system
#13
keithmewis
closed
9 years ago
0
Empty sequences cause parser to fail.
#12
nielshanson
closed
10 years ago
0
ML-TreeMap Integration
#11
nielshanson
closed
7 years ago
1
PRKM Integration
#10
nielshanson
closed
9 years ago
0
Grid setup and use
#9
nielshanson
closed
7 years ago
0
executable compilation and compatibility
#8
nielshanson
closed
9 years ago
0
.fastq support
#7
nielshanson
closed
9 years ago
0
gff and gbk file compatibility
#6
nielshanson
closed
9 years ago
1
Friendly and intelligent error messages
#5
nielshanson
closed
7 years ago
0
C++ GUI tests
#4
nielshanson
closed
10 years ago
0
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