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hammerlab
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cycledash
Variant Caller Analysis Dashboard and Data Management System
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Headers in the VCF table are uppercase (CSS) but the actual names that you can query with CQL are lowercase
#715
ihodes
opened
9 years ago
6
Better exception formatting.
#714
ihodes
closed
9 years ago
2
Design
#713
jaclynperrone
closed
9 years ago
16
Capture metrics to track user behavior
#712
jaclynperrone
opened
9 years ago
4
"x" for pileup view overlaps with scroll bar in Chrome
#711
hammer
closed
9 years ago
1
Redesign the VCF comparison table and examine page
#710
jaclynperrone
closed
9 years ago
1
User accounts and basic ACL
#709
ihodes
closed
9 years ago
1
Use livereactload to reload new JS without refreshing the page
#708
ihodes
closed
9 years ago
1
Bump pyensembl to 0.6.9
#707
ihodes
closed
9 years ago
0
Allow flagging/tagging/liking/starring or something of variants/genotypes
#706
ihodes
closed
9 years ago
2
Integrate display of variants in the run being compared to into the variant table
#705
ihodes
opened
9 years ago
0
SASS Re-compilation takes ~2s: cut down recompilation to only the changed file
#704
ihodes
opened
9 years ago
0
Update to pileup 0.1.1
#703
danvk
closed
9 years ago
0
Pass the new &format= param to IGV
#702
danvk
closed
9 years ago
1
Use "chromosome" instead of "contig" throughout the user interface
#701
armish
opened
9 years ago
4
Comments bubble shouldn't appear if there are no comments
#700
jaclynperrone
closed
9 years ago
0
Implement a new worker for Cycledash that will annotate Protein-level changes for a given variant/VCF file
#699
hammer
closed
9 years ago
2
Add chat client (like olark) to Cycledash page
#698
ihodes
closed
9 years ago
4
Opening pileup.js crashing tab
#697
ihodes
closed
9 years ago
2
ESC button should close pileup view
#696
ihodes
opened
9 years ago
0
A user should be able to delete projects and uploaded files
#695
jaclynperrone
opened
9 years ago
1
Create guided tooltip-tour to onboard new users
#694
hammer
opened
9 years ago
1
Enable joining with comparison VCF on different keys
#693
ihodes
opened
9 years ago
0
Allow user to query VCF being compared to
#692
ihodes
opened
9 years ago
0
Explain to users how true/false positive/negative is being calculated
#691
ihodes
opened
9 years ago
2
Fix impossible stats & regression test
#690
ihodes
closed
9 years ago
4
Make clear to users what happens when filters are applied
#689
ihodes
opened
9 years ago
2
Cursor = pointer on all comments
#688
ihodes
opened
9 years ago
0
The pileup view should pop out into a new window
#687
jaclynperrone
opened
9 years ago
9
Project empty state on Runs page
#686
jaclynperrone
opened
9 years ago
4
Pileup.js should use the CycleDash API
#685
danvk
opened
9 years ago
0
Create a mechanism for users to ask questions of Cycledash developers
#684
hammer
opened
9 years ago
0
Don't support NFS: `/upload`should move VCFs to HDFS
#683
ihodes
closed
9 years ago
1
Are we supporting only Hadoop clusters?
#682
ihodes
opened
9 years ago
3
A project shouldn't show an empty Runs table
#681
jaclynperrone
closed
8 years ago
0
fix missing space in error message
#680
ihodes
closed
9 years ago
0
Show suggested routes for 404s on API routes
#679
ihodes
closed
9 years ago
2
Add tests for genotypes api, fix contig ordering
#678
ihodes
closed
9 years ago
1
Move project notes above the Add buttons on Runs page.
#677
jaclynperrone
closed
9 years ago
2
Add styles.css link to tasks page
#676
jaclynperrone
closed
9 years ago
2
A user should be able to flag a variant
#675
jaclynperrone
closed
8 years ago
4
Add fields to comments for reporting
#674
jaclynperrone
opened
9 years ago
5
How can users share comments and saved filters with their team?
#673
jaclynperrone
opened
9 years ago
4
Gene annotator doesn't seem to be working—PyEnsembl
#672
ihodes
closed
9 years ago
8
Update docs
#671
ihodes
closed
9 years ago
2
BAM/RUNs form overlaps project notes
#670
ihodes
closed
9 years ago
3
Comments are not as wide as the runs table
#669
ihodes
closed
9 years ago
2
Task restart button doesn't hit right URL
#668
ihodes
closed
9 years ago
0
POST to the right URI
#667
ihodes
closed
9 years ago
2
Show a history of queries applied to a VCF file
#666
jaclynperrone
opened
9 years ago
0
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