issues
search
haniffalab
/
webatlas-pipeline
A data pipeline built in Nextflow to process spatial and single-cell experiment data for visualisation in WebAtlas
MIT License
46
stars
10
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
fixed issue with docker environment
#149
StasMakarchuk
opened
5 hours ago
0
Query with Enabling Colormap Legend in WebAtlas Scatterplot
#148
chunhuicai
opened
4 days ago
0
Why vitessce didn't show the UMAP modeule?
#147
uush99
opened
2 weeks ago
1
Feat/fill c2l
#146
dannda
opened
1 month ago
0
Not able to visualize the data hosted on AWS S3 bucket
#145
ashishjain1988
closed
1 month ago
2
How to increase the spots of the spatial data?
#144
ashishjain1988
opened
2 months ago
1
Dev
#143
dannda
opened
2 months ago
0
Patch/extended feature name
#142
dannda
closed
2 months ago
0
Merscope label generation fails on datasets storing boundary data in parquet files
#141
cb2e6f
opened
3 months ago
1
Merscope - Cell ID/Entity ID out of range
#140
cb2e6f
opened
3 months ago
0
Not able to see celltypes after processing the multimodal data with the multimodal run
#139
ashishjain1988
opened
3 months ago
10
add params.publish_generated_img
#138
dannda
closed
3 months ago
0
Leftover `.tif` files in the output folder
#137
prete
closed
3 months ago
2
Test ISS (in situ sequencing) data to verify the processing of ISS data processing
#136
ashishjain1988
closed
3 months ago
2
Error while running the pipeline using singularity
#135
ashishjain1988
closed
3 months ago
5
0.5.2
#134
dannda
closed
3 months ago
0
fix singularity profile
#133
dannda
closed
3 months ago
0
Not able to run the pipeline using singularity
#132
ashishjain1988
closed
3 months ago
1
Patch for Xenium software analyzer >= 2.0.0
#131
prete
closed
4 months ago
3
update docs
#130
dannda
closed
9 months ago
0
update docs
#129
dannda
closed
9 months ago
0
Update docs
#128
dannda
closed
9 months ago
0
Create release 0.5.1
#127
davehorsfall
closed
10 months ago
1
Create release 0.5.0
#126
davehorsfall
closed
11 months ago
1
Feat/multimodal
#125
dannda
closed
11 months ago
1
Image metadata output
#124
davehorsfall
opened
1 year ago
1
Multiple resolution sets found. Use 'variable' or 'group' to filter
#123
davehorsfall
closed
1 year ago
2
Update sphinx-build workflow badge across documentation
#122
davehorsfall
closed
11 months ago
0
Feat/write spatialdata
#121
dannda
closed
1 year ago
1
Automate generation of docker images and deployment on new tagged release
#120
davehorsfall
closed
1 year ago
0
Create release 0.4.1
#119
davehorsfall
closed
1 year ago
1
split sphinx actions to build and deploy
#118
dannda
closed
1 year ago
2
Update templates and docs to make the usage of url parameter clearer
#117
davehorsfall
opened
1 year ago
1
add documentation on multimodal pipeline
#116
dannda
closed
1 year ago
1
Split and organise environment and container files
#115
davehorsfall
closed
1 year ago
1
Split dev requirements
#114
davehorsfall
closed
1 year ago
0
Document AWS config
#113
davehorsfall
opened
1 year ago
0
Create release 0.4.0
#112
davehorsfall
closed
1 year ago
0
/home/runner/work/_temp/63744ae6-9592-4799-9178-c7a7e99f995b.sh: line 3: pre-commit: command not found
#111
davehorsfall
closed
1 year ago
0
Failed actions - wrong python version
#110
davehorsfall
closed
1 year ago
0
Failed actions
#109
davehorsfall
closed
1 year ago
0
WebAtlas pipeline and WebAtlas App
#108
armaos
closed
1 year ago
9
Multimodal test
#107
dannda
closed
1 year ago
2
Using PNG raw images results in distorted color scheme
#106
d-goryslavets
opened
1 year ago
3
Add more video screencasts
#105
davehorsfall
opened
1 year ago
1
nextflow.config
#104
davehorsfall
opened
1 year ago
2
Missing pytest-cov
#103
davehorsfall
closed
1 year ago
0
pre-commit: command not found
#102
davehorsfall
closed
1 year ago
0
Improve documentation
#101
davehorsfall
closed
1 year ago
0
Python scripts not executable
#100
davehorsfall
closed
1 year ago
1
Next