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harrispopgen
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mushi
[mu]tation [s]pectrum [h]istory [i]nference
https://harrispopgen.github.io/mushi/
MIT License
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heatmaps for matrix vizualization
#24
wsdewitt
closed
5 years ago
2
Rank regularize
#23
wsdewitt
closed
5 years ago
0
k-SFS, mutation history matrix, and frequency binning---oh my!
#22
wsdewitt
closed
5 years ago
0
11 msprime
#21
wsdewitt
closed
5 years ago
0
placing msprime mutations according to mushi \mu(t)
#20
wsdewitt
closed
5 years ago
0
simulation with msprime
#19
wsdewitt
closed
5 years ago
0
No weight ramp
#18
wsdewitt
closed
5 years ago
0
Markov random field priors
#17
wsdewitt
closed
4 years ago
6
ramping regularization with TMRCA CDF
#16
wsdewitt
closed
5 years ago
1
dimension reduction for mutational signatures
#14
wsdewitt
closed
5 years ago
0
fused lasso
#13
wsdewitt
closed
5 years ago
5
Use "real" coalescent simulation, instead of just the forward model
#11
wsdewitt
closed
4 years ago
9
SFS noise model
#10
wsdewitt
closed
5 years ago
1
Get rid of shitty xkcd plots
#9
kamdh
closed
5 years ago
0
Enforcing flatness beyond the coalescent horizon
#8
wsdewitt
closed
5 years ago
14
Convergence theory for large n
#7
wsdewitt
closed
4 years ago
5
enforcing eta(T) = eta(infty)
#6
kamdh
closed
5 years ago
1
indexing errors in formulae
#5
kamdh
closed
5 years ago
4
Gaussian measure to handle asymptotic boundary condition
#4
wsdewitt
closed
5 years ago
1
Derive gradient instead of relying on numerical differentiation
#3
wsdewitt
closed
5 years ago
10
trapezoidal instead of box quadrature for expected coalescent times
#2
wsdewitt
closed
5 years ago
1
push code commit
#1
kamdh
closed
5 years ago
0
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