hasaru-k GlimmaV2 issues

hasaru-k / GlimmaV2

interactive plots for differential expression analysis

GNU Lesser General Public License v3.0

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issues

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Plot controls are vertical in markdown documents for glimmaMDS

#99 jmacdon opened 1 week ago
0
Fix buildXYData status bug

#98 IgnatiusPang opened 1 month ago
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glimmaVolcano.MArrayLM when x contains multiple columns coefficients it fails

#97 IgnatiusPang opened 1 month ago
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Fix glimmaXY extraction of feature names

#96 nghiaagent opened 1 month ago
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Add min_y_axis to glimmaXY/glimmaMA/glimmaVolcano?

#95 jdrnevich opened 2 months ago
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glimmaVolcano p.adj.method not automatically carried over to status' decideTests function

#94 IgnatiusPang opened 2 months ago
0
Synced to bioconductor

#93 Shians closed 3 months ago
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#87: css fix

#92 hasaru-k closed 3 months ago
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configurable minimum y-axis for expression plot

#91 hasaru-k closed 4 months ago
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Blank plot when gene annotation only contains one column

#90 Shians opened 6 months ago
0
Saving Glimma html Files from Script

#89 danphillips28 closed 1 week ago
1
GlimmaXY() does not extract gene names from supplied vectors properly

#88 nghiaagent opened 7 months ago
2
The y-axis of the exprContainer on the right side is not adjusting the minimal expression value

#87 brunosa3 closed 3 months ago
8
Cannot "Save Data" after deploying website

#86 mei-du opened 8 months ago
1
Glimma Following DESeq2 and LogFC Shrinkage

#85 dpphill1 opened 9 months ago
0
Removing possibly redundant files

#84 PeteHaitch opened 10 months ago
1
Save plot function not working in Safari

#83 axz91 opened 1 year ago
0
[ISSUE 77] Resolving TOC Knitting interaction with Glimma

#82 hasaru-k closed 4 months ago
0
Testing Slack integration

#81 hasaru-k closed 1 year ago
0
BiocStyle::html_document does not render Glimma plots

#80 nztao closed 2 years ago
1
volcano plot got very slow in chrome with macbook

#79 axz91 opened 2 years ago
1
Error in buildXYData

#78 sarah872 opened 2 years ago
1
Rendering Glimma plots after knitting

#77 joseale2310 closed 10 months ago
7
Deseq2 no negative logCPM

#76 Pahi95 opened 3 years ago
1
Jitter Points

#75 danphillips28 closed 2 years ago
1
Bumping version to match bioc devel

#74 Shians closed 3 years ago
0
Deleted LazyData statement in DESCRIPTION

#73 Shians closed 3 years ago
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Added volcano plot to vignette and some code fixes

#72 Shians closed 3 years ago
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Improved status labels

#71 hasaru-k closed 3 years ago
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Better messaging for comparison directionality

#70 hasaru-k opened 3 years ago
0
Textual legend values

#69 hasaru-k opened 3 years ago
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PDF output

#68 hasaru-k opened 3 years ago
0
Minification pipeline

#67 hasaru-k opened 3 years ago
0
"all.equal(counts, round(counts))" causes errors in GlimmaMA (or GlimmaXY)

#65 yejilee-biostat closed 3 years ago
2
Added logrpkm transform for MA plots

#64 Shians closed 3 years ago
0
fix svg bug

#63 hasaru-k closed 3 years ago
1
MDS plot - can't save SVG

#62 hasaru-k closed 3 years ago
0
Expression colourscheme

#61 hasaru-k closed 3 years ago
0
rounding max count

#60 hasaru-k closed 3 years ago
0
colourscheme dropdown for exp plot

#59 hasaru-k closed 3 years ago
1
Rounding Max Value Warning

#58 hasaru-k closed 3 years ago
0
changing transform defaults

#57 hasaru-k closed 3 years ago
1
Dge polymorphism

#56 hasaru-k closed 3 years ago
0
Minor edits to help pages

#55 charitylaw closed 3 years ago
1
Update glimmaMDS.R

#54 charitylaw closed 3 years ago
1
Added single cell vignette

#53 Shians closed 3 years ago
0
Symbol column is extracted not cased

#52 hasaru-k closed 3 years ago
1
Changed "GlimmaV2" references to "Glimma"

#51 Shians closed 4 years ago
0
Initial merge of Glimma V1

#50 Shians closed 4 years ago
0
Added examples

#49 Shians closed 4 years ago
0