hasaru-k GlimmaV2 issues

hasaru-k / GlimmaV2

interactive plots for differential expression analysis

GNU Lesser General Public License v3.0

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issues

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Small tweaks to fix CI build

#47 Shians closed 4 years ago
0
Fixed dependency on Glimma v1

#46 Shians closed 4 years ago
0
Added options to transform.counts argument

#45 Shians closed 4 years ago
0
SC Data - Sparse matrix representation

#44 hasaru-k opened 4 years ago
0
MA Plot - Preserving "symbol" column casing

#43 hasaru-k closed 3 years ago
0
XY Plot - dge polymorphism to reduce args

#42 hasaru-k closed 3 years ago
0
XY Plot - table exclusion

#41 hasaru-k opened 4 years ago
0
Temporarily restored Glimma import

#40 Shians closed 4 years ago
0
Fixed bug introduced when I changed sapply to vapply

#39 Shians closed 4 years ago
0
Single save button for saving plots PNG/SVG

#38 OliverVoogd closed 4 years ago
0
Fixes for BiocCheck

#37 Shians closed 4 years ago
0
Bug fixes

#36 Shians closed 4 years ago
0
XY/MA fixes

#35 OliverVoogd closed 4 years ago
1
Group colours

#34 hasaru-k closed 4 years ago
1
Distinct colours

#33 OliverVoogd closed 4 years ago
1
Added vignettes

#32 Shians closed 4 years ago
0
Added example data from RNAseq123

#31 Shians closed 4 years ago
0
basic testing

#30 hasaru-k closed 4 years ago
1
Save args

#29 hasaru-k closed 4 years ago
1
Help pages navigation improvements

#28 hasaru-k closed 4 years ago
0
Help page navigation

#27 hasaru-k closed 4 years ago
0
Number of distinct colours for MDS plot colourschemes

#26 hasaru-k closed 4 years ago
0
Code cleanup

#25 hasaru-k closed 4 years ago
0
temporal selection

#24 hasaru-k closed 4 years ago
0
Volcano plot addition

#23 hasaru-k closed 4 years ago
0
Problems at installation.

#22 chodarq closed 4 years ago
2
Allow user to fix y-axis of expression plot

#21 hasaru-k closed 4 years ago
0
modularise setupXYInteraction function

#20 hasaru-k closed 4 years ago
0
split up setupXYInteraction

#19 hasaru-k closed 4 years ago
0
Added handling of NA rows from DESeq results and changed renderer

#18 Shians closed 4 years ago
0
Added more support for DE result inputs

#17 Shians closed 4 years ago
1
Save table subset

#16 hasaru-k closed 4 years ago
0
transforming counts, better indexing, MA legend + gene panel

#15 hasaru-k closed 4 years ago
0
expression plot update

#14 hasaru-k closed 4 years ago
0
expression plot object support

#13 hasaru-k closed 4 years ago
0
Expression plot updates

#12 hasaru-k closed 4 years ago
0
Expression plot clearing

#11 hasaru-k closed 4 years ago
0
Expression plot

#10 hasaru-k closed 4 years ago
0
edgeR support

#9 hasaru-k closed 4 years ago
0
separate out glimmaMDS, glimmaXY

#8 hasaru-k closed 4 years ago
0
internal separation of glimmaMDS, glimmaXY

#7 hasaru-k closed 4 years ago
0
XYplot layout

#6 hasaru-k closed 4 years ago
0
Allow MA plot to occupy full space if counts not provided

#5 hasaru-k closed 4 years ago
1
MDS widget height too high

#4 hasaru-k closed 4 years ago
1
Multiple plot display bug fixes

#3 hasaru-k closed 4 years ago
0
Multiple plots not displaying in knitted HTML

#2 hasaru-k closed 4 years ago
0
Added SVG saving

#1 Shians closed 4 years ago
0