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hbc
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bcbioRNASeq
R package for bcbio RNA-seq analysis.
https://bioinformatics.sph.harvard.edu/bcbioRNASeq
GNU Affero General Public License v3.0
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`_setup.R` file needs to be updated.
#195
jxshi
closed
5 months ago
4
`deseq` results seemed weired when setting different `lfc_threshold` values
#194
jxshi
closed
7 months ago
2
Error while exporting
#193
kokyriakidis
closed
1 year ago
1
Functional Analysis Template
#192
Adrian-Zet
closed
1 year ago
10
Add complex interaction in the template
#191
kokyriakidis
closed
1 year ago
4
Error: subscript is a NSBS object that is incompatible with the current subsetting operation
#190
kokyriakidis
closed
1 year ago
14
Issues with templates: Differential Expression & Functional Analysis
#189
Adrian-Zet
closed
1 year ago
5
Differential Expression Analysis
#188
mfcesur
closed
1 year ago
5
Error in validObject
#187
mfcesur
closed
1 year ago
3
Update README to reflect Docker URL change
#186
mjsteinbaugh
closed
1 year ago
0
Installation error
#185
kokyriakidis
closed
2 years ago
9
DESeq2 plot functions not found with bcbioRNASeq
#184
VictoriaPatten
closed
2 years ago
57
Markdown template improvements
#183
mjsteinbaugh
closed
2 years ago
0
v0.4.0
#182
mjsteinbaugh
closed
2 years ago
0
error with plotDEGHeatmap
#181
Xiaofei-git
closed
2 years ago
1
got an Error in validObject(object) for bcb
#180
Xiaofei-git
closed
2 years ago
1
`plotTotalReads` debugging for bcbio-nextgen 1.2.9 / bcbioRNASeq 0.3.44
#179
mjsteinbaugh
closed
2 years ago
8
updatet to 0.3.44
#178
naumenko-sa
closed
2 years ago
0
Update skeleton.Rmd
#177
naumenko-sa
closed
2 years ago
0
What does the ```|>``` symbol mean in the new ```Functional Annotation``` rmarkdown template mean?
#176
jxshi
closed
3 years ago
5
Missing conda packages
#175
kokyriakidis
closed
3 years ago
20
Functional Analysis issues
#174
kokyriakidis
closed
3 years ago
2
Labels are not showing in plotVolcano
#173
kokyriakidis
closed
3 years ago
3
Bcbio run with 2 callers
#172
kokyriakidis
closed
3 years ago
2
GeneName and GeneID fail
#171
kokyriakidis
closed
3 years ago
20
Error in loading data from ```final``` directory.
#170
jxshi
closed
3 years ago
32
Error in .local(object, ...) : unused argument (DESeqDataSet = new("DESeqDataSet", design = ~phenotype, dispersionFunction = function (q)
#169
gongmeiyuan
closed
3 years ago
8
Error: is.list(gene2entrez) is not TRUE for "Mus musculus"
#168
jxshi
closed
3 years ago
8
Error creating DESeqAnalysis object
#167
kokyriakidis
closed
3 years ago
2
Error while running DE analysis
#166
kokyriakidis
closed
3 years ago
4
NameSpace error
#165
yfukasawa
closed
3 years ago
2
v0.3.39
#164
mjsteinbaugh
closed
3 years ago
0
Update installation instructions
#163
mjsteinbaugh
closed
3 years ago
0
v0.3.38
#162
mjsteinbaugh
closed
3 years ago
0
Data Import error message
#161
tiger815
closed
3 years ago
4
v0.3.37
#160
mjsteinbaugh
closed
4 years ago
0
vst counts are not defined in object.
#159
tiger815
closed
4 years ago
3
v0.3.36
#158
mjsteinbaugh
closed
4 years ago
0
Improve installation instructions and unit tests
#157
mjsteinbaugh
closed
4 years ago
0
v0.3.35
#156
mjsteinbaugh
closed
4 years ago
0
v0.3.34
#155
mjsteinbaugh
closed
4 years ago
0
2020-06-09
#154
mjsteinbaugh
closed
4 years ago
0
Functional Analysis markdown template crashes
#153
adam-forward
closed
3 years ago
7
v0.3.33
#152
mjsteinbaugh
closed
4 years ago
0
final export step of markdown crashes R
#151
sjmonkley
closed
4 years ago
5
v0.3.32
#150
mjsteinbaugh
closed
4 years ago
0
error loading DESeqAnalysis
#149
sjmonkley
closed
4 years ago
3
With v0.3.31 prepareTemplate can't find files for markdown
#148
sjmonkley
closed
4 years ago
4
v0.3.31
#147
mjsteinbaugh
closed
4 years ago
0
'updateObject' now fails after updating packages
#146
sjmonkley
closed
4 years ago
2
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