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hbctraining
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DGE_workshop_salmon_online
https://hbctraining.github.io/DGE_workshop_salmon_online/
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updates to FA lessons
#57
mistrm82
opened
1 month ago
1
WGCNA link missing from lesson about network analysis
#56
hwick
opened
1 month ago
1
typos in LRT self learning and summarizing workflow
#55
hwick
closed
1 month ago
0
featureCount link broken
#54
hwick
closed
1 month ago
1
Orgdb note didn't work in Gene annotation
#53
Gammerdinger
opened
1 month ago
2
Day 3 Exercises
#52
Gammerdinger
opened
1 month ago
0
LRT lesson refers to objects created in previous lessons which students may not have loaded up
#51
hwick
opened
1 month ago
0
update clustering figure from LRT lesson to reflect y axis change in new version
#50
hwick
opened
1 month ago
2
update FA lessons
#49
mistrm82
opened
2 months ago
0
cnet plot size warning/legend, lesson text does not match plot output
#48
hwick
closed
2 months ago
1
Formulas in self-learning broken
#47
Gammerdinger
opened
7 months ago
0
Broken Link
#46
benjibromberg
closed
2 months ago
1
pathview doesn't work
#45
hwick
closed
2 months ago
2
gseKEGG no longer recommends nperm, and other issues
#44
hwick
closed
2 months ago
2
deseq2 figure for wald test results
#43
eberdan
closed
9 months ago
0
Dispersion figure from DESEQ paper
#42
eberdan
closed
7 months ago
2
count normalization figure
#41
eberdan
closed
2 months ago
1
design formula order
#40
mistrm82
closed
9 months ago
4
clustering coloring
#39
eberdan
opened
1 year ago
0
extra pink dot
#38
eberdan
closed
2 months ago
1
Bug Fixes
#37
Gammerdinger
closed
9 months ago
1
Add broken link
#36
jihe-liu
closed
9 months ago
1
Day 3 Dropdowns
#35
Gammerdinger
closed
1 year ago
0
adda facet plot to link in viz lesson
#34
mistrm82
opened
1 year ago
0
create pulldown for day 2
#33
mistrm82
closed
1 year ago
0
create dropdown for day 1
#32
jihe-liu
closed
1 year ago
0
create pull down descriptions for self-learning
#31
mistrm82
closed
1 year ago
0
Creating annotation file tx2gene for NCBI human transcriptome
#30
ellalalalalalala
closed
1 year ago
1
Fix ggplot2 link
#29
Gammerdinger
closed
2 years ago
1
add detail on effective length and countsfromAbundance
#28
mistrm82
closed
2 years ago
1
simplify the dispersion description
#27
mistrm82
closed
2 years ago
0
Adding gene names to KEGG output
#26
marypiper
closed
1 year ago
2
apeglm stat removed
#25
marypiper
closed
2 years ago
2
Revise description for TMM
#24
jihe-liu
closed
2 years ago
0
Create project with data and folders
#23
jihe-liu
closed
2 years ago
1
for cluster profiler new msigdbr package
#22
marypiper
closed
1 year ago
2
Add note about knockout genes continuing to be expressed
#21
rkhetani
opened
2 years ago
2
Look into this package for GO term hierarchy viz
#20
marypiper
opened
3 years ago
1
update the demo code at bottom of viz lesson
#19
mistrm82
closed
1 year ago
1
GSEgo error
#18
mistrm82
closed
2 years ago
3
cleanup the workflow overview lesson
#17
mistrm82
closed
2 years ago
1
a note for the warning in dotplot
#16
mistrm82
closed
2 years ago
3
paring down the dispersion lesson
#15
mistrm82
closed
2 years ago
1
Added a note
#14
rkhetani
closed
2 years ago
0
Minor proposal on paragraph 102
#13
kant
closed
2 years ago
0
Minor fixes on paragraphs 46 & 52
#12
kant
closed
3 years ago
0
Duplicate word on line 137
#11
kant
closed
3 years ago
0
Minor proposal on line 42
#10
kant
closed
3 years ago
0
Minor fix on line 11/paragraph 75 & 132 & 179
#9
kant
closed
3 years ago
1
Minor proposal on final backtick on line 79
#8
kant
closed
3 years ago
0
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