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hpcaitech
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FastFold
Optimizing AlphaFold Training and Inference on GPU Clusters
Apache License 2.0
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add wandb
#142
oahzxl
closed
1 year ago
0
fix distributed sampler for ddp and add dap
#141
Gy-Lu
closed
1 year ago
0
Align dataset with alphafold v2.3
#140
Shenggan
closed
1 year ago
0
enable all inference and train on Gaudi/Gaudi2 with optimized perf with latest base
#139
LeoZhao-Intel
closed
1 year ago
2
add metrics for training
#138
Gy-Lu
closed
1 year ago
2
fix when hit.sum_probs is none
#137
Shenggan
closed
1 year ago
0
TypeError in fastfold/data/templates.py
#136
kashyapchhatbar
closed
1 year ago
2
Confidence metrics
#135
georgkempf
closed
1 year ago
3
enable all inference and train on Gaudi/Gaudi2 with optimized perf
#134
LeoZhao-Intel
closed
1 year ago
0
Enable saving prediction output
#133
kashyapchhatbar
closed
1 year ago
1
Save prediction output pickle file
#132
kashyapchhatbar
closed
1 year ago
3
add support on habana platform
#131
Shenggan
closed
1 year ago
0
fix wrong para import and update protein class
#130
Shenggan
closed
1 year ago
0
Differences between fastfold and alphfold about databases
#129
Luanxins
opened
1 year ago
1
support alphafold v2.3 param
#128
Shenggan
closed
1 year ago
1
fix indentation
#127
oahzxl
closed
1 year ago
0
Error when model parameters from AlphaFold v2.3.0 (multimer_v3.npz) are used
#126
kashyapchhatbar
closed
1 year ago
6
wrong indentation?
#125
georgkempf
closed
1 year ago
1
fix weights import function
#124
Shenggan
closed
1 year ago
1
Function not accessible
#123
georgkempf
closed
1 year ago
1
How can I test 5 models at once
#122
zhoujingyu13687306871
opened
1 year ago
1
fix loss path in relax/amber_minimize.py
#121
Shenggan
closed
1 year ago
0
Issues after last commit
#120
SSchott
closed
1 year ago
1
inference error when predicting multimer sequence
#119
ssn1771
closed
1 year ago
5
support training, fix some inplace func of nn
#118
Gy-Lu
closed
1 year ago
1
refactor chunk for training
#117
Gy-Lu
closed
1 year ago
0
modify data module for fastfold train
#116
Gy-Lu
closed
1 year ago
0
CUDA out of memory
#115
zzy221127
opened
1 year ago
1
fatal error: cuda.h: No such file or directory
#114
zzy221127
opened
1 year ago
7
pdb_seqres.txt parse error when execute hmmsearch
#113
ssn1771
closed
1 year ago
2
Update LICENSE
#112
binmakeswell
closed
1 year ago
0
Is the use of template a must for running FastFold?
#111
kwanUm
opened
1 year ago
1
init commit of training
#110
Gy-Lu
closed
1 year ago
0
[fastnn] add triton flash attention
#109
Shenggan
closed
1 year ago
0
[update] update some setting
#108
oahzxl
closed
1 year ago
0
Ray storage dir cannot be created
#107
dominik-handler
closed
1 year ago
1
Template all atom mask was all zeros error
#106
dominik-handler
closed
1 year ago
3
[hotfix] Fix multimer communication bug in evoformer
#105
oahzxl
closed
1 year ago
0
Update cuda version in readme
#104
oahzxl
closed
1 year ago
0
Fix multimer kernel bug
#103
oahzxl
closed
1 year ago
0
compare the predicted and actual structure
#102
mukulem
opened
1 year ago
5
Illegal memory access error after get_chi_atom_indices
#101
georgkempf
opened
1 year ago
12
Update readme and docker for v0.2.0
#100
oahzxl
closed
1 year ago
0
Re-organize file and align results
#99
oahzxl
closed
1 year ago
0
Align results and update unit tests
#98
oahzxl
closed
1 year ago
0
Move template modification from nn to fastnn
#97
oahzxl
closed
1 year ago
0
Unittest
#96
oahzxl
closed
1 year ago
0
modify requirements, fix CI container (#94)
#95
Gy-Lu
closed
1 year ago
0
modify requirements, fix CI container
#94
Gy-Lu
closed
1 year ago
0
modify requirements, fix CI container
#93
Gy-Lu
closed
1 year ago
0
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