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hpcaitech
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FastFold
Optimizing AlphaFold Training and Inference on GPU Clusters
Apache License 2.0
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modify requirements, fix CI container
#93
Gy-Lu
closed
1 year ago
0
Fix ci container (#89)
#92
oahzxl
closed
1 year ago
0
Align results and organize files
#91
oahzxl
closed
1 year ago
0
Align results and update unit tests
#90
oahzxl
closed
1 year ago
0
Fix ci container
#89
oahzxl
closed
1 year ago
0
Re-organize file and align results
#88
oahzxl
closed
1 year ago
0
Test CI (#86)
#87
Gy-Lu
closed
1 year ago
0
Test CI
#86
Gy-Lu
closed
1 year ago
0
Add CI and inference unit test
#85
Gy-Lu
closed
1 year ago
0
Move template modification from nn to fastnn
#84
oahzxl
closed
1 year ago
0
fixed bugs in softmax kernel and update unittest for softmax
#83
Shenggan
closed
1 year ago
1
add unit test for layernorm, linear, outproductmean
#82
oahzxl
closed
1 year ago
1
Fix OuterProductMean
#81
oahzxl
closed
1 year ago
0
fix row_idx overflow in triton softmax
#80
Shenggan
closed
1 year ago
0
Update environment.yml
#79
oahzxl
closed
1 year ago
0
Triton kernel
#78
Shenggan
closed
1 year ago
1
Multimer supports chunk and inplace
#77
oahzxl
closed
1 year ago
1
Fix workflow path format
#76
oahzxl
closed
1 year ago
0
type_extentions import error
#75
oahzxl
closed
1 year ago
1
Update workflow store dir and readme
#74
oahzxl
closed
1 year ago
2
update docker build instruction in readme
#73
Shenggan
closed
1 year ago
0
Use inplace to save memory
#72
oahzxl
closed
1 year ago
1
ColossalAi missing from PyPi
#71
bernym12
closed
1 year ago
3
add multimer workflow
#70
Fazziekey
closed
1 year ago
2
Optimize long sequence inference memory
#69
oahzxl
closed
1 year ago
2
fix data workflow name bug
#68
Fazziekey
closed
1 year ago
0
update fastfold_data_workflow
#67
Fazziekey
closed
1 year ago
0
cuda error for inference with multimer model
#66
Fazziekey
closed
1 year ago
1
support small_bfd with ray
#65
Gy-Lu
closed
1 year ago
2
bug fix
#64
Fazziekey
closed
1 year ago
0
support multimer
#63
Fazziekey
closed
1 year ago
0
duplicate module fastfold.np and fastfold.common / fastfold.relax
#62
Shenggan
closed
1 year ago
1
dependency update openmm 7.5.1 -> 7.7.0
#61
Shenggan
closed
1 year ago
0
Update to newer OpenMM
#60
peastman
closed
1 year ago
2
add multimer inference
#59
Fazziekey
closed
1 year ago
2
add hmmsearch
#58
Fazziekey
closed
1 year ago
1
Multimer
#57
Fazziekey
closed
1 year ago
1
fix inference
#56
Fazziekey
closed
1 year ago
0
Multimer
#55
Fazziekey
closed
1 year ago
1
Miltimer
#54
Fazziekey
closed
1 year ago
1
add faster extraMSA and templateStack
#53
Gy-Lu
closed
1 year ago
0
support ray2.0
#52
Fazziekey
closed
1 year ago
2
Add more parameter functionality to HHBlits and HHSearch runners
#51
plasmas
closed
1 year ago
0
modify reading data way and add inference test
#50
Gy-Lu
closed
2 years ago
3
fix workflow
#49
Fazziekey
closed
2 years ago
0
merge data workflow to main
#48
Gy-Lu
closed
2 years ago
0
add inference script
#47
Fazziekey
closed
2 years ago
1
Revert "Revert "Workflow""
#46
Gy-Lu
closed
2 years ago
0
Revert "Workflow"
#45
Gy-Lu
closed
2 years ago
0
support data alignment workflow
#44
Fazziekey
closed
2 years ago
4
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