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hpcaitech
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FastFold
Optimizing AlphaFold Training and Inference on GPU Clusters
Apache License 2.0
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Revert "Workflow"
#45
Gy-Lu
closed
2 years ago
0
support data alignment workflow
#44
Fazziekey
closed
2 years ago
4
support worlflow for data preprocess
#43
Fazziekey
closed
2 years ago
2
Workflow
#42
Gy-Lu
closed
2 years ago
1
upload docker file and workflow
#41
Gy-Lu
closed
2 years ago
0
update README
#40
Fazziekey
closed
2 years ago
0
Any way to fold a multimer?
#39
mrhoag5
closed
2 years ago
0
add chunk for self_att and opm
#38
Shenggan
closed
2 years ago
0
CUDA out of memory problem
#37
ssn1771
closed
2 years ago
4
fix backward return for fused softmax torch function
#36
Shenggan
closed
2 years ago
0
Python Module bug
#35
lupoglaz
closed
2 years ago
2
remove scale in fused softmax kernel
#34
Shenggan
closed
2 years ago
0
CUDA kernel bug
#33
lupoglaz
closed
2 years ago
1
The error of "Some NCCL operations have failed or timed out. Due to the asynchronous nature of CUDA kernels....."
#32
heavenAsk
closed
2 years ago
2
how to use .a3m file as input
#31
lzhangUT
opened
2 years ago
1
Inference speed
#30
llwx593
closed
2 years ago
2
Warning: Torch did not find available GPUs on this system.
#29
JOJO-wc-rabbit
closed
2 years ago
2
About error of inference question
#28
zhoujingyu13687306871
opened
2 years ago
24
add cuda environment for conda environment.yml
#27
ycsos
closed
2 years ago
1
Unittest softmax
#26
Shenggan
closed
2 years ago
0
use template in layernorm kernel & add unittest for fastnn layernorm
#25
Shenggan
closed
2 years ago
0
fix dap init in benchmark
#24
Shenggan
closed
2 years ago
0
Conda environment - no CUDA
#23
arneelof
opened
2 years ago
1
different dap
#22
liuxm117
opened
2 years ago
12
No module named 'fastfold_softmax_cuda'
#21
SimonKitSangChu
opened
2 years ago
5
fix overflow for softmax kernel
#20
Shenggan
closed
2 years ago
0
CUDA error (Illegal memory access)
#19
gahdritz
closed
2 years ago
3
sync with openfold 591d10d
#18
Shenggan
closed
2 years ago
0
Bugfixes need to be pulled from the OpenFold repo
#17
gahdritz
closed
2 years ago
1
About Training Settings
#16
GuoxiaWang
opened
2 years ago
6
add openmm patch and readme
#15
Shenggan
closed
2 years ago
0
add inference pipeline from openfold/alphafold
#14
Shenggan
closed
2 years ago
0
use colossalai as distributed core
#13
Shenggan
closed
2 years ago
0
fix mask softmax and support inference for arbitrary length sequences
#12
Shenggan
closed
2 years ago
0
data problem when use dap
#11
liuxm117
opened
2 years ago
9
About the distributed inference
#10
YiningWang2
opened
2 years ago
2
RuntimeError: CUDA error: no kernel image is available for execution on the device
#9
Wolverinerine
opened
2 years ago
1
use dap in openfold
#8
liuxm117
opened
2 years ago
1
About the memory consumption
#7
YiningWang2
closed
2 years ago
1
add inject_openfold
#6
Shenggan
closed
2 years ago
0
error: command '/usr/local/cuda-11.1/bin/nvcc' failed with exit status 1
#5
addsubmuldiv
opened
2 years ago
1
fix minor bug in gather
#4
Shenggan
closed
2 years ago
0
About the inference performance
#3
YiningWang2
closed
2 years ago
2
Consider leveraging deepspeed
#2
LifeIsStrange
closed
2 years ago
4
refactor kernel implementation
#1
Shenggan
closed
2 years ago
0
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