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hubmapconsortium
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portal-containers
Docker containers to pre-process data for visualization in the portal
MIT License
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Created metadata to store masknames for zarr stores
#134
tkakar
opened
2 days ago
1
Tkakar/cat 672 portal container seg mask
#133
tkakar
closed
2 days ago
0
Tkakar/cat 673 portal container seg mask
#132
tkakar
closed
1 week ago
0
NickAkhmetov/Use single source for ATAC clusters, rename to `ArchR Clusters (ATAC)`
#131
NickAkhmetov
closed
4 months ago
0
NickAkhmetov/Generate genomic profiles for azimuth labels
#130
NickAkhmetov
closed
5 months ago
0
NickAkhmetov/Ensure genomic profiles are output into the correct folder
#129
NickAkhmetov
closed
5 months ago
0
NickAkhmetov/Fix handling of numpy matrices
#128
NickAkhmetov
closed
5 months ago
0
NickAkhmetov/Fix docker push script, fix missed cbb column name
#127
NickAkhmetov
closed
5 months ago
0
NickAkhmetov/Update atac_cbb/atac_cbg cluster column names
#126
NickAkhmetov
closed
5 months ago
0
Update `mudata-to-ui` to accept updated h5mu filename
#125
NickAkhmetov
closed
5 months ago
0
Begin versioning the repo and creating repo-level git tags corresponding to versions
#124
keller-mark
opened
5 months ago
0
NickAkhmetov/Post-container update cleanup
#123
NickAkhmetov
closed
5 months ago
1
CAT-601 Nickakhmetov/Update portal containers' python/anndata dependencies
#122
NickAkhmetov
closed
5 months ago
0
Add `mudata-to-ui` container
#121
NickAkhmetov
closed
5 months ago
2
[CAT-156] Handle missing H5AD files, bump travis CI env version
#120
NickAkhmetov
closed
7 months ago
1
Proposal: python package with docker container wrapper
#119
keller-mark
opened
1 year ago
2
Fix cluster name handling in atac-seq script
#118
keller-mark
closed
1 year ago
0
Bump cryptography from 2.7 to 39.0.1 in /containers/anndata-to-ui/context
#117
dependabot[bot]
opened
1 year ago
0
Bump cryptography from 2.7 to 39.0.1 in /containers/sprm-to-anndata/context
#116
dependabot[bot]
opened
1 year ago
0
Bump cryptography from 2.7 to 39.0.1 in /containers/sprm-to-json/context
#115
dependabot[bot]
opened
1 year ago
0
Bump cryptography from 2.7 to 39.0.1 in /containers/ome-tiff-offsets/context
#114
dependabot[bot]
opened
1 year ago
0
Bump cryptography from 2.7 to 39.0.1 in /containers/h5ad-to-arrow/context
#113
dependabot[bot]
opened
1 year ago
0
Bump version of container
#112
keller-mark
closed
1 year ago
0
Update script
#111
keller-mark
closed
1 year ago
0
Bump certifi from 2019.9.11 to 2022.12.7 in /containers/sprm-to-anndata/context
#110
dependabot[bot]
opened
1 year ago
0
Bump certifi from 2019.9.11 to 2022.12.7 in /containers/anndata-to-ui/context
#109
dependabot[bot]
opened
1 year ago
0
Bump certifi from 2019.9.11 to 2022.12.7 in /containers/sprm-to-json/context
#108
dependabot[bot]
opened
1 year ago
0
Bump certifi from 2019.9.11 to 2022.12.7 in /containers/ome-tiff-offsets/context
#107
dependabot[bot]
opened
1 year ago
0
Bump certifi from 2019.11.28 to 2022.12.7 in /containers/h5ad-to-arrow/context
#106
dependabot[bot]
opened
1 year ago
0
Bump pillow from 7.1.1 to 9.3.0 in /containers/ome-tiff-offsets/context
#105
dependabot[bot]
opened
1 year ago
0
`sprm-to-anndata` and `sprm-to-json` shouldn't depend on cell polygons from SPRM
#104
mruffalo
opened
2 years ago
3
Bump numpy from 1.20.1 to 1.22.0 in /containers/anndata-to-ui/context
#103
dependabot[bot]
opened
2 years ago
0
Bump numpy from 1.17.4 to 1.22.0 in /containers/sprm-to-json/context
#102
dependabot[bot]
opened
2 years ago
0
Bump numpy from 1.17.4 to 1.22.0 in /containers/sprm-to-anndata/context
#101
dependabot[bot]
opened
2 years ago
0
Bump numpy from 1.18.2 to 1.22.0 in /containers/ome-tiff-offsets/context
#100
dependabot[bot]
opened
2 years ago
0
Bump numpy from 1.17.4 to 1.22.0 in /containers/h5ad-to-arrow/context
#99
dependabot[bot]
opened
2 years ago
0
Fail fast is there are no matches for glob
#98
mccalluc
closed
2 years ago
2
Fail if no inputs match glob
#97
mccalluc
closed
2 years ago
0
Bump numpy from 1.17.4 to 1.21.0 in /containers/scatac-csv-to-arrow/context
#96
dependabot[bot]
opened
2 years ago
0
Bump numpy from 1.18.2 to 1.21.0 in /containers/ome-tiff-offsets/context
#95
dependabot[bot]
closed
2 years ago
1
Bump numpy from 1.17.4 to 1.21.0 in /containers/sprm-to-anndata/context
#94
dependabot[bot]
closed
2 years ago
1
Bump numpy from 1.17.4 to 1.21.0 in /containers/sprm-to-json/context
#93
dependabot[bot]
closed
2 years ago
1
Bump urllib3 from 1.24.2 to 1.26.5 in /containers/scatac-csv-to-arrow/context
#92
dependabot[bot]
opened
2 years ago
0
Bump cryptography from 2.7 to 3.3.2 in /containers/scatac-csv-to-arrow/context
#91
dependabot[bot]
opened
2 years ago
0
Bump pillow from 7.1.1 to 9.0.1 in /containers/ome-tiff-offsets/context
#90
dependabot[bot]
closed
1 year ago
1
Cannot install cwltool because ... rdflib-jsonld version
#89
mccalluc
opened
2 years ago
0
Warn if no input for sprm-to-anndata
#88
mccalluc
closed
2 years ago
2
Error if no matches for glob
#87
mccalluc
closed
2 years ago
0
Bump pillow from 7.1.1 to 9.0.0 in /containers/ome-tiff-offsets/context
#86
dependabot[bot]
closed
2 years ago
1
Cast factors indices to int in h5ad-to-arrow
#85
keller-mark
closed
2 years ago
0
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