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huidongchen / simba

SIMBA: SIngle-cell eMBedding Along with features
https://simba-bio.readthedocs.io
BSD 3-Clause "New" or "Revised" License
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dimensionality-reduction embedding graph graph-embedding multiomics single-cell-analysis

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documentation CI Anaconda install with bioconda codecov

SIMBA

SIMBA: SIngle-cell eMBedding Along with features

Website: https://simba-bio.readthedocs.io

Manuscript: Huidong Chen, Jayoung Ryu, Michael E. Vinyard, Adam Lerer & Luca Pinello. "SIMBA: single-cell embedding along with features. Nat Methods (2023)".