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hybridLambda
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hybrid-Lambda
Hybrid-Lambda is a software package that can simulate gene trees within a rooted species network or a rooted species tree under the Kingman's coalescent or Lambda coalescent process.
http://hybridlambda.github.io/
GNU General Public License v3.0
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Problems with networks with no single hybridization
#46
acosta187
opened
2 years ago
3
Verbose pathdiff
#45
gaballench
closed
2 years ago
4
segmentation fault with hybrid ladder
#44
laufran
opened
2 years ago
5
Custom network induces an additional leaf
#43
gaballench
opened
2 years ago
1
Level-2 networks sometimes cause segfault or warnings about ultrametricity
#42
gaballench
opened
3 years ago
4
remove duplicate headers from Makefile.am
#41
downloadico
closed
3 years ago
0
36 network reading
#40
shajoezhu
closed
3 years ago
0
38 hotfix
#39
shajoezhu
closed
3 years ago
0
issue with terminal nodes labelling
#38
shajoezhu
closed
3 years ago
8
Adding tests for issue #36
#37
shajoezhu
opened
3 years ago
0
bug with reading network, else question about network format
#36
cecileane
closed
3 years ago
14
version: patch # bump
#35
cecileane
closed
4 years ago
2
dbg
#34
shajoezhu
closed
5 years ago
1
update, checking when unique node are included
#33
shajoezhu
closed
5 years ago
0
seg fault
#32
shajoezhu
closed
5 years ago
1
make branch doc
#31
shajoezhu
closed
5 years ago
0
negative gene tree branch length when species tree is not ultramatric
#30
shajoezhu
closed
5 years ago
3
Use lambada in Windows 10 x64
#29
Samaneh1981
closed
5 years ago
1
fix #27
#28
shajoezhu
closed
6 years ago
0
bl in number of generations need to be adjusted
#27
shajoezhu
closed
6 years ago
0
rework on adjust bl for simulating trees, fix #25
#26
shajoezhu
closed
6 years ago
0
distance between taxa is not right, compare with theoretical values
#25
shajoezhu
closed
6 years ago
0
tree topology distribution
#24
shajoezhu
closed
6 years ago
0
species trees and networks must be fully labelled.
#23
shajoezhu
opened
6 years ago
0
tree branch length not right in number of generations when define population size with a tree
#22
shajoezhu
opened
6 years ago
0
fix issue20
#21
shajoezhu
closed
6 years ago
0
should return an error message when the species tree and generation tree taxa not matching
#20
shajoezhu
closed
6 years ago
0
simulate gene duplication
#19
shajoezhu
closed
5 years ago
1
Seed
#18
shajoezhu
closed
8 years ago
0
random number generator seeding is not right
#17
shajoezhu
closed
8 years ago
1
Fixing psi
#16
shajoezhu
closed
9 years ago
0
resolve ambigious to_string function problem
#15
shajoezhu
closed
9 years ago
1
tmp change for calculating binomial coefficient, when gcc4.4 is used, bo...
#14
shajoezhu
closed
8 years ago
0
include bjarki's comments regarding to psi power calculation
#13
shajoezhu
closed
9 years ago
1
error handling when multi merger parameter is out of range
#12
shajoezhu
closed
9 years ago
0
Wdeprecated-register on Mac
#11
shajoezhu
closed
9 years ago
0
download zip archive, and compile
#10
shajoezhu
closed
9 years ago
0
mac compiling issue
#9
shajoezhu
closed
9 years ago
0
R wrapper
#8
shajoezhu
opened
9 years ago
0
compile on windows, use travis ci to test
#7
shajoezhu
opened
9 years ago
0
hybrid-Lambda fst return -nan
#6
shajoezhu
opened
9 years ago
1
compile with clang gives seg fault ...
#5
shajoezhu
closed
9 years ago
0
unit test for figure is not working
#4
shajoezhu
closed
9 years ago
1
to do list
#3
shajoezhu
opened
9 years ago
0
use log fast table
#2
shajoezhu
opened
9 years ago
0
bug
#1
shajoezhu
closed
9 years ago
1