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hyunhwan-jeong
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SalmonTE
SalmonTE is an ultra-Fast and Scalable Quantification Pipeline of Transpose Element (TE) Abundances
GNU General Public License v3.0
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Count data for analysis
#31
FabianDK
closed
4 years ago
9
No version or release tagged
#30
ebirn
closed
5 years ago
1
mapping strategy
#29
AlicePsyche
closed
5 years ago
2
Salmon TE does not load all the fastq
#28
SalimMegat
closed
3 years ago
20
quant mode error "name 'directory' is not defined"
#27
mbk0asis
closed
4 years ago
4
SnakeFile Single Issue
#26
juanb001
closed
5 years ago
19
Installation issue
#25
vasilislenis
closed
5 years ago
3
what is the expected mapping rate?
#24
bihuimel
closed
5 years ago
1
Counts data are not integers
#23
sumeetpalsingh
closed
5 years ago
1
mapping rate
#22
wjyzidane
closed
5 years ago
4
Request: add extended clades to references
#21
tantrev
closed
5 years ago
2
Input own reference file?
#20
oronoc1210
closed
5 years ago
7
Failed SalmonTE example run
#19
wesleylcai
closed
5 years ago
2
SalmonTE quant outputs empty EXPR.csv file when used with mm reference
#18
arpitpanda01
closed
5 years ago
3
Documentations
#17
hyunhwan-jeong
closed
5 years ago
0
Fail at SalmonTE test
#16
bioysu
closed
5 years ago
2
Customise Annotation
#15
jwalser
closed
5 years ago
3
Output directories must be flagged with directory()
#14
Puputnik
closed
5 years ago
12
Bioconda support
#13
bgruening
opened
6 years ago
7
pair-end files
#12
wjyzidane
closed
5 years ago
12
UnicodeDecodeError
#11
wjyzidane
closed
6 years ago
13
Error when running "SalmonTE.py test"
#10
wwliao
closed
6 years ago
5
build index from species which is not available in Repbase
#9
YiweiNiu
closed
5 years ago
18
Empty ouput for fastq.gz files
#8
adomingues
closed
6 years ago
14
UnicodeDecodeError
#7
adomingues
closed
6 years ago
4
small RNA-seq
#6
adomingues
closed
5 years ago
5
reference
#5
wjyzidane
closed
6 years ago
17
Nothing to be done
#4
wjyzidane
closed
6 years ago
8
No module named 'pandas'
#3
wjyzidane
closed
6 years ago
5
SalmonTE crashes on macOS.
#2
hyunhwan-jeong
closed
6 years ago
2
SalmonTE on Galaxy server
#1
sarah872
closed
6 years ago
10
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