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iTaxoTools
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TaxI2
Calculation and analysis of pairwise sequence distances
GNU General Public License v3.0
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Add options to (i) impute missing distances and (ii) to autocorrect distances from incomplete sequences
#40
mvences
opened
2 years ago
0
Add additional program mode: Filter
#39
mvences
opened
2 years ago
0
Fix resource usage for Python3.8 and Windows
#38
StefanPatman
closed
2 years ago
0
Import FASTA and Genbank readers from inputchecker
#37
necrosovereign
opened
2 years ago
0
Distance tables in percent
#36
necrosovereign
closed
2 years ago
0
Add support for spart.xml
#35
mvences
opened
2 years ago
0
Consider inclusion of ASAPy in TaxI3
#34
mvences
opened
2 years ago
1
Add distance matrices in percent as output in all-against-all comparison
#33
mvences
closed
2 years ago
0
DECONT2 mode
#32
necrosovereign
closed
2 years ago
0
Add additional mode: DECONT2
#31
mvences
closed
2 years ago
0
Correction in displaying square tables
#30
necrosovereign
closed
2 years ago
0
Add initial tab to header line of matrix table output
#29
mvences
closed
2 years ago
1
Add "pyckmeans" clustering
#28
mvences
opened
3 years ago
0
Add option for user settings in Decont and Derep modes in new GUI
#27
mvences
opened
3 years ago
0
Decontaminate mode
#26
necrosovereign
closed
3 years ago
0
Dereplicate mode
#25
necrosovereign
closed
3 years ago
1
Error message for incorrectly formatted species
#24
necrosovereign
closed
3 years ago
0
Add meaningful error message when species/organism name consists of only one word
#23
mvences
closed
3 years ago
0
Add new program mode: NCBI Blast
#22
mvences
opened
3 years ago
2
Add new program mode: decontaminate
#21
mvences
closed
3 years ago
0
Add new program mode: dereplicate
#20
mvences
closed
3 years ago
6
Add MDS scatterplot visualization of genetic distance / clusters / species
#19
mvences
opened
3 years ago
0
Corrections for issue #17
#18
necrosovereign
closed
3 years ago
0
Small corrections in compatibility of user options, GUI and output
#17
mvences
closed
3 years ago
0
Alfpy distance calculation for all-against-all comparison
#16
necrosovereign
closed
3 years ago
1
Simple sequence statistics
#15
necrosovereign
closed
3 years ago
0
Adds clearing of previous results
#14
necrosovereign
closed
3 years ago
0
Implement simple sequence statistics
#13
mvences
closed
3 years ago
2
Implement "alignment free" distance calculation
#12
mvences
closed
3 years ago
3
Calculating the whole distance table using Rust code
#11
necrosovereign
closed
3 years ago
0
Allow user to set alignment parameters in GUI
#10
mvences
opened
3 years ago
7
'Intraspecific lineages' comparison type
#9
necrosovereign
closed
3 years ago
0
Small probable typo in Rust version
#8
mvences
closed
3 years ago
0
Add option of multiple sequence alignment before performing all-against-all comparisons
#7
mvences
opened
3 years ago
0
Add one additional category: Intraspecific lineage
#6
mvences
closed
3 years ago
0
Implement high-throughput sequence comparison via BLAST or BLAT or MMseq2
#5
mvences
closed
3 years ago
1
Implement support of phylogenetic trees to calculate genetic distances between direct sister species
#4
mvences
opened
3 years ago
3
Support for XLSX files
#3
necrosovereign
closed
3 years ago
0
Distance calculation using Rust
#2
necrosovereign
closed
3 years ago
0
Disable plotting when there is no species information
#1
necrosovereign
closed
3 years ago
0