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ihmwg
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python-ihm
Python package for handling IHM mmCIF and BinaryCIF files
MIT License
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IDmapper for assemblies does not work for some PDB-dev entries
#45
saijananiganesan
closed
4 years ago
3
Don't allow Entities in Assemblies
#44
benmwebb
closed
4 years ago
0
Support features defined on entities, not asyms
#43
benmwebb
closed
4 years ago
0
bool(ihm.unknown) should return False
#42
benmwebb
closed
5 years ago
0
Change _ihm_chemical_descriptor to _ihm_chemical_component_descriptor in dumper.py
#41
CAHanke
closed
5 years ago
2
Add FLR classes for fluorescence experiments
#40
CAHanke
closed
5 years ago
0
Use special object for values marked as ?
#39
benmwebb
closed
5 years ago
0
Read starting model coordinates
#38
benmwebb
closed
5 years ago
0
Add support for predicted contact restraints
#37
benmwebb
closed
5 years ago
0
Add warnings if reader encounters unknown categories or items
#36
benmwebb
closed
5 years ago
0
Broken URL in example script
#35
shruthivis
closed
5 years ago
1
Avoid hitting the network in MRCParser
#34
benmwebb
closed
5 years ago
0
Extend _entity.src_method to accept values allowed in the PDBx/mmCIF dictionary
#33
brindakv
closed
5 years ago
1
TypeError attempting to read PDB 6ep0
#32
benmwebb
closed
5 years ago
0
Add a new mmCIF-compatible binary format, e.g. for trajectories
#31
benmwebb
opened
5 years ago
4
Allow adding extra user-defined categories
#30
benmwebb
closed
5 years ago
0
Add faster C API for reading loop constructs
#29
benmwebb
opened
5 years ago
0
Add support for pseudo atoms
#28
benmwebb
closed
5 years ago
0
Representation does not have to be a strict subset of assembly
#27
benmwebb
closed
5 years ago
0
Add group_id to derived_distance_restraints
#26
mtrellet
closed
5 years ago
1
Add support for audit_conform category
#25
brindakv
closed
5 years ago
0
Verify Atom/Sphere against Representation type
#24
benmwebb
closed
5 years ago
0
Provide an example for using nonstandard/modified residues
#23
benmwebb
closed
5 years ago
1
Change PolyResidueFeature type to 'residue' when a unique residue is provided
#22
mtrellet
closed
5 years ago
0
Allows for non-polymer atoms in Entity declaration
#21
mtrellet
closed
5 years ago
2
Report an error if no fits are provided for a restraint
#20
benmwebb
opened
5 years ago
0
Should verify seq_ids in spheres/atoms against representation & assembly
#19
benmwebb
closed
5 years ago
0
Should verify asym_ids in spheres/atoms against representation & assembly
#18
benmwebb
closed
5 years ago
0
Prohibit or warn about non-ascii characters in strings
#17
benmwebb
closed
2 years ago
1
Add support for pdbx_nonpoly_scheme table
#16
benmwebb
closed
5 years ago
0
Error when gap(s) present in the input structure
#15
mtrellet
closed
6 years ago
5
Add basic symmetry operations
#14
benmwebb
opened
6 years ago
0
Add DCD support
#13
benmwebb
closed
6 years ago
0
Remove __hash__ from some/most classes
#12
benmwebb
opened
6 years ago
0
Add MMTF support
#11
benmwebb
opened
6 years ago
1
Add read support
#10
benmwebb
closed
5 years ago
1
Support auth_seq_id
#9
benmwebb
closed
6 years ago
1
Allow manual specification of asym_id
#8
benmwebb
closed
6 years ago
0
Provide support for generic distance restraints
#7
brindakv
closed
6 years ago
0
Populate Citations from just pubmed ID
#6
benmwebb
closed
6 years ago
0
Add support for Entities that are not amino acid sequences
#5
benmwebb
closed
6 years ago
0
Add support for crosslinks
#4
benmwebb
closed
6 years ago
0
Make Assembly class more flexible
#3
benmwebb
opened
6 years ago
0
Write a design principles doc
#2
benmwebb
closed
6 years ago
0
Get rid of AssemblyComponent class
#1
benmwebb
closed
6 years ago
0
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