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SmartRNASeqCaller
SmartRNASeqCaller is a post-processing pipeline to improve germline variant calling from RNA-Seq data
GNU Lesser General Public License v3.0
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resources/hg38/intron_slice* -> intron_splice*
#11
brianjohnhaas
opened
3 years ago
0
Issues installing caret package via docker/nextflow
#10
PrincescaDorsaint
opened
3 years ago
0
Problems in predict_variants.R script
#9
dreammxy
opened
3 years ago
1
Running smartRNASeqCaller on hg38
#8
travelanywhere
closed
4 years ago
2
Docker error
#7
PrincescaDorsaint
closed
4 years ago
11
filters not compatible with 'chr' in chromosome identifiers. ie. requires '1' instead of 'chr1'
#6
brianjohnhaas
closed
4 years ago
1
SmartRNASeqCaller/Nextflow/params.yaml intron file mis-spelling
#5
brianjohnhaas
closed
4 years ago
1
Using RDConnect_RNASeq for input to SmartRNASeqCaller
#4
brianjohnhaas
opened
4 years ago
4
Where is RNA edited sites from?
#3
wangshun1121
closed
5 years ago
1
How many variants per cell should I expected after classification ?
#2
ahy1221
closed
4 years ago
1
How to prepare resource files for hg38 ?
#1
ahy1221
closed
5 years ago
3