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include-dcc
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include-linkml
LinkML Schema for INCLUDE DCC
https://include-dcc.github.io/include-linkml/
MIT License
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Prep file/assay manifests for unharmonized release
#156
lopierra
opened
7 months ago
0
R scripts for clinical data ETL - updates needed
#155
lopierra
opened
8 months ago
0
2024 01 15 updates
#154
lopierra
closed
8 months ago
0
update hakonarson study name; add containerAvailability
#153
lopierra
closed
8 months ago
0
Validation rule: Mother/Father/Sibling/Other Relative ID should only be filled in for Proband - should be blank for non-Probands
#152
lopierra
opened
9 months ago
0
add Collection Location to Biospecimen? for multi-site studies
#151
lopierra
opened
9 months ago
0
Can we show enum Titles in auto-generated docs?
#150
lopierra
closed
3 months ago
0
Coordinate Race, Ethnicity, other "missingness" values between KF and INCLUDE
#149
lopierra
opened
10 months ago
1
in future HTP harmonization, don't replace Unknown with NA
#148
lopierra
opened
11 months ago
0
ask HTP to send specific Family Types for Control-only families (needed for CHOP Bix)
#147
lopierra
opened
11 months ago
0
HTP: Change `Parent` to `Mother` or `Father` for V5
#146
lopierra
opened
11 months ago
0
be consistent about whether Sibling (& other relative IDs) in same cell are separated by commas vs pipes
#145
lopierra
opened
11 months ago
0
Bring back `Presevation Method` field?
#144
lopierra
opened
11 months ago
0
add containerGlobalId to Biospecimen
#143
lopierra
opened
1 year ago
0
Consider adding Substudy/Grant/etc to Study
#142
lopierra
closed
7 months ago
1
How to display Conditions that are Not Observed vs Data Not Collected
#141
lopierra
opened
1 year ago
0
Incorporate HTP's new family types
#140
lopierra
opened
1 year ago
0
add ContainerAvailability to Biospecimen
#139
lopierra
opened
1 year ago
0
add VBR URL and VBR Readme to Study
#138
lopierra
closed
7 months ago
0
v5 - work on Data Contributor guide with Matt G & others
#137
lopierra
opened
1 year ago
0
add cognitive metadata to model
#136
lopierra
opened
1 year ago
5
add social determinants of health to model
#135
lopierra
opened
1 year ago
0
talk to portal team about including fields from harmonized data that aren't currently in portal
#134
lopierra
opened
1 year ago
0
add URL field to Study (for study website)
#133
lopierra
closed
7 months ago
1
add more descriptions, etc. to YAML files to fill out documentation
#132
lopierra
opened
1 year ago
0
Consider changing "Proband-only" Family Type to "Solo" to include Control singletons
#131
lopierra
opened
1 year ago
0
Files - add field for whether it is an actual file (e.g. omics) or a pointer (e.g. ABCDS)
#130
lopierra
opened
1 year ago
0
Families - be consistent about whether Proband-only families should get a Family ID
#129
lopierra
opened
1 year ago
0
Look into making Study metadata into a form
#128
lopierra
opened
1 year ago
2
add methods/protocols link to Data Files component & Data Contributor Guide
#127
lopierra
opened
1 year ago
0
Change Study Code `X01-Hakon` to `X01-Hakonarson`
#126
lopierra
closed
1 year ago
0
can we have different Required fields for different manifests?
#125
lopierra
closed
1 year ago
0
Rethink consent group field in model
#124
lopierra
opened
1 year ago
0
familyRelationship should be Required
#123
lopierra
opened
1 year ago
0
re-generating jsonld and csv from yaml (no changes to model)
#122
lopierra
closed
1 year ago
0
add flexibility to Measures
#121
lopierra
opened
1 year ago
0
family types - add Siblings?
#120
lopierra
opened
1 year ago
0
Specify the races in "more than one race" when available
#119
lopierra
opened
1 year ago
0
add hasStudy to Condition
#118
lopierra
closed
1 year ago
0
Think about whether we should set up the data model to be amenable to {schematic_db}
#117
lopierra
opened
1 year ago
0
define `hasParticipant`, `hasBiospecimen`, `hasStudy`, `hasDatafile` in model (post March)
#116
lopierra
opened
1 year ago
3
Work on formatting and static pages for documentation
#115
lopierra
opened
1 year ago
0
Definitions in docs are cut off weirdly
#114
lopierra
opened
1 year ago
0
fixed a couple more capitalizations of ID
#113
lopierra
closed
1 year ago
0
add Global to slot names and descriptions for INCLUDE internal IDs
#112
lopierra
closed
1 year ago
0
combine condition+measure source text & age; capitalize HPO, MONDO, MAXO
#111
lopierra
closed
1 year ago
0
Update Schematic to handle edges with Classes as the range
#110
putmantime
opened
1 year ago
2
Assay - determine whether relationships are needed
#109
lopierra
opened
1 year ago
1
Develop enums for Study, Biospecimen, Data File, Assay and add ontology terms
#108
lopierra
opened
1 year ago
3
Develop
#107
lopierra
closed
1 year ago
2
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