instadeepai InstaNovo issues

instadeepai / InstaNovo

De novo peptide sequencing with InstaNovo: Accurate, database-free peptide identification for large scale proteomics experiments

Apache License 2.0

45 stars 7 forks source link

issues

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build(deps): bump pypa/gh-action-pypi-publish from 1.4.2 to 1.10.2

#54 dependabot[bot] opened 1 week ago
1
build(deps): bump scikit-learn from 1.4.1.post1 to 1.5.2

#53 dependabot[bot] opened 2 weeks ago
1
build(deps): update griffe requirement from <0.48.0 to <1.4.0

#52 dependabot[bot] opened 2 weeks ago
1
build(deps): bump pypa/gh-action-pypi-publish from 1.4.2 to 1.10.1

#51 dependabot[bot] closed 1 week ago
2
build(deps): bump pypa/gh-action-pypi-publish from 1.4.2 to 1.10.0

#50 dependabot[bot] closed 3 weeks ago
2
build(deps): update griffe requirement from <0.48.0 to <1.3.0

#49 dependabot[bot] closed 2 weeks ago
2
build(deps): bump scikit-learn from 1.4.1.post1 to 1.5.1

#48 dependabot[bot] closed 2 weeks ago
2
build(deps): bump spectrum-utils from 0.4.1 to 0.4.2

#47 dependabot[bot] opened 1 month ago
1
build(deps-dev): bump pytest-mock from 3.8.2 to 3.14.0

#46 dependabot[bot] opened 1 month ago
1
build(deps): update griffe requirement from <0.48.0 to <1.2.0

#45 dependabot[bot] closed 1 month ago
2
build(deps): bump seaborn from 0.12.0 to 0.13.2

#44 dependabot[bot] opened 1 month ago
1
build(deps): bump pypa/gh-action-pypi-publish from 1.4.2 to 1.9.0

#43 dependabot[bot] closed 1 month ago
2
build(deps): bump actions/setup-python from 4 to 5

#42 dependabot[bot] opened 1 month ago
1
ci: set environment variable correctly when testing notebooks on Windows

#41 BioGeek closed 1 month ago
0
build: fix build issue on Windows, fix building docs and fix dependabot

#40 BioGeek closed 1 month ago
0
TypeError in convert_to_ipc when comparing charge values

#39 cliang-huanglab opened 3 months ago
0
Possibile to output amino acid probability/score for downstream protein assembly?

#38 irleader opened 3 months ago
0
Illustration of pretrained model checkpoint

#37 irleader opened 4 months ago
1
keyerror when running prediction mode

#36 irleader opened 5 months ago
4
Positional probabilities of amino acids in denovo peptide predictions

#35 ayavinash opened 5 months ago
1
Test notebook in CI

#34 BioGeek closed 7 months ago
0
Release 0.1.7

#33 BioGeek closed 7 months ago
0
Test notebook in CI

#32 BioGeek closed 7 months ago
0
ci: add dependabot to update github actions and packages

#31 BioGeek closed 7 months ago
0
docs: add link to Tran et al 2017 + fix ploars link

#30 BioGeek closed 7 months ago
0
Fix version conflict for docs build

#29 BioGeek closed 7 months ago
0
fix: update benchmark URL to InstaDeepAI/ms_ninespecies_benchmark

#28 BioGeek closed 7 months ago
0
Add integration test

#27 BioGeek closed 7 months ago
0
Question about de novo prediction of own datasets

#26 JannikSchneider12 opened 7 months ago
0
checkpoint model

#25 hxxhust163 opened 11 months ago
6
fix: dataloader using old schema

#24 KevinEloff closed 11 months ago
0
Key error - Incorrect parsing of Amino acids

#23 denisbeslic closed 11 months ago
1
parquest file format

#22 denisbeslic opened 11 months ago
1
refactor: linting

#21 BioGeek closed 11 months ago
0
InstaNovov on Windows

#20 lostculture closed 11 months ago
3
feat: generalise mgf to all metadata

#19 KevinEloff closed 11 months ago
0
Add GitHub action to purge GitHub cache of badge image on new release

#18 BioGeek closed 11 months ago
0
instanovo.transformer.predict and instanovo.utils.convert_to_ipc

#17 cguetot closed 11 months ago
4
Is there a pre-computed knapsack file available?

#16 lostculture closed 11 months ago
5
InstaNovo+ iterative refinement training code

#15 Happyers opened 12 months ago
2
feat: Use loss for diffusion confidence

#14 amabinsta closed 12 months ago
0
feat: add conversion scripts, update beam-search, update links

#13 KevinEloff closed 12 months ago
1
getting best top N results

#12 cguetot closed 12 months ago
2
Update colab

#11 amabinsta closed 1 year ago
0
Diffusion code release

#10 amabinsta closed 1 year ago
1
feat: add support for checkpoints with configs

#9 KevinEloff closed 1 year ago
1
Add support for checkpoints with configs

#8 KevinEloff closed 1 year ago
0
fix: update URLs

#7 BioGeek closed 1 year ago
0
docs: add hyperlinks

#6 BioGeek closed 1 year ago
0
Pypi

#5 BioGeek closed 1 year ago
0