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jambler24
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GenGraph
A repository for the GenGraph toolkit for the creation and manipulation of graph genomes
GNU General Public License v3.0
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Need help running the code.
#38
eros273
opened
1 year ago
0
Incorrect version being displayed.
#37
russellsmithies
opened
2 years ago
0
Alignment parameter file
#36
jambler24
closed
2 years ago
0
Develop
#35
jambler24
closed
3 years ago
0
[Question] vg versus GenGraph
#34
minu7
opened
3 years ago
0
[HELP / FEATURE] is it possible to use a single fasta file containing many genomes?
#33
minu7
opened
3 years ago
1
Checked, add comments, reduced min number of blocks to 1
#32
jambler24
closed
3 years ago
0
No such file or directory: 'globalAlignment_khush.backbone'
#31
Logan1x
opened
3 years ago
10
[BUG?] Error: progressiveMauve_call error: output of progressiveMauve empty
#30
minu7
closed
3 years ago
3
Feature/homology creation
#29
jambler24
closed
3 years ago
0
Added doc to check_isolates_in_region
#28
jambler24
closed
3 years ago
1
Gfa
#27
jambler24
closed
3 years ago
0
Read alignment functions
#26
jambler24
closed
3 years ago
0
Align testing setup
#25
jambler24
closed
3 years ago
0
Homology creation testing
#24
jambler24
closed
3 years ago
0
tweak to unit test align
#23
jambler24
closed
3 years ago
0
Improvements to progressiveMauve wrapper, paths to scratch
#22
jambler24
closed
3 years ago
0
Networkx 2.4 fixes
#21
jambler24
closed
4 years ago
0
NetworkX v2.4 support
#20
jambler24
closed
4 years ago
2
Troubleshoot enhancements
#19
jambler24
closed
4 years ago
0
Running problem
#18
mhmdsabry
closed
4 years ago
0
Read aligner 2
#17
jambler24
closed
4 years ago
0
Gengraph running problem
#16
Devinaseeruttun
opened
4 years ago
28
TypeError: set_node_atttributes() missing 1 required positional gengraph argument: 'values'
#15
jainv45
opened
4 years ago
2
Multithreading experiment
#14
jambler24
closed
4 years ago
0
Added debruin_read_alignment for graphs, v0.1
#13
jambler24
closed
4 years ago
0
Novice to python
#12
Devinaseeruttun
closed
4 years ago
4
Liam - Homology & Gene Type Assessment Functions
#11
ghost
closed
4 years ago
0
Convert / import vg gfa file
#10
jambler24
opened
4 years ago
0
set mauve scratch path
#9
jambler24
opened
5 years ago
21
Add progressiveMauve path as a flag for gengraphTool.py
#8
jambler24
closed
4 years ago
1
Work on the ancestral genome function
#7
jambler24
closed
4 years ago
1
Add support for multiple cores
#6
jambler24
closed
4 years ago
1
Look into using PyPy
#5
jambler24
opened
5 years ago
3
deepcopy
#4
jambler24
closed
5 years ago
1
Sequence recreate check taking too long
#3
jambler24
closed
4 years ago
1
Substrings of other isolate names as isolate names
#2
jambler24
closed
5 years ago
1
Remove excess debugging information
#1
jambler24
closed
5 years ago
1