jamesdolezal slideflow issues

jamesdolezal / slideflow

Deep learning library for digital pathology, with both Tensorflow and PyTorch support.

https://slideflow.dev

GNU General Public License v3.0

230 stars 38 forks source link

issues

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[BUG] Following slideflow documentation for running the containers leads to error.

#387 Nicolai-98 opened 5 hours ago
0
Change the progress bar in features generation step

#386 RichardVu3 opened 3 weeks ago
0
[QUESTION] Is the Pandas < 2 restriction necessary?

#385 lcniel opened 3 weeks ago
0
[QUESTION] Is Ninja required to run this?

#384 lcniel opened 3 weeks ago
0
Update add_features

#383 RichardVu3 opened 3 weeks ago
0
[BUG] Package Conflicts with Pyomo/Bonmin in with environments created with environment.yml

#382 emmachancellor opened 3 weeks ago
0
Using ctranspath for extractor on build_feature_extractor gives error

#381 maxxfarma opened 4 weeks ago
0
Unable to use sf.DatasetFeatures with zip files

#380 maxxfarma opened 4 weeks ago
1
Issue n tissue

#379 matte-esse closed 1 month ago
0
Update invert_roi() to work correctly

#378 RichardVu3 closed 1 month ago
0
Optimized segment

#377 matte-esse closed 1 month ago
0
Change in aggregate_trainval_bags_by_patient

#376 RichardVu3 opened 1 month ago
0
[BUG] Issue with multi-threading when using blur filtering

#375 tnnandi opened 1 month ago
0
Balanced bags

#374 RichardVu3 opened 1 month ago
0
Change seaborn pin to <0.14

#373 johnurbanik opened 1 month ago
0
[LICENSE] GPL is not compatible with restricting to non-commercial use

#372 johnurbanik opened 1 month ago
3
Balanced mil bags

#371 matte-esse closed 1 month ago
0
[BUG] cannot download preconfigured dataset

#370 WNZhao1988 opened 1 month ago
0
Issue n tissue

#369 matte-esse closed 1 month ago
0
Issue and tissue

#368 matte-esse opened 1 month ago
0
Equal feats

#367 RichardVu3 closed 1 month ago
0
Cph

#366 matte-esse closed 1 month ago
0
Cannot use predict slide for MIL model

#365 jziggles opened 2 months ago
0
MIL with Stain Augmentation

#364 sanosano opened 2 months ago
0
Project doesn't see slides. Help needed.

#363 LeventAksakal opened 2 months ago
1
Updating invert_roi and functions to process tissues_n_issues

#362 RichardVu3 closed 1 month ago
0
Is slideflow studio supported on Windows?

#361 LeventAksakal closed 2 months ago
2
[BUG] Heatmap generation error

#360 jziggles opened 2 months ago
0
multimodal inputs of clinical information in multiple instance learning

#359 NaokiThread opened 2 months ago
1
[BUG] ValueError: DataLoader does not contain any batches when using attention/transmil MIL method

#358 NaokiThread opened 2 months ago
0
filter_bags_by_df

#357 matte-esse opened 2 months ago
0
[BUG] Project-wise cell segmentation does not run

#356 Sbrussee closed 2 months ago
1
[BUG] Multiprocessing error when using multi-GPU feature extraction

#355 NaokiThread opened 2 months ago
2
Multiple GPU Acceleration

#354 NaokiThread closed 2 months ago
4
`torch` implementation of Time-to-event (CoxProportionalHazard) models

#353 matte-esse opened 3 months ago
0
How do I run Slideflow studio from the docker container

#352 Phues opened 3 months ago
2
Small fixes

#351 matte-esse opened 3 months ago
0
Update neptune_utils.py

#350 luiscarm9 closed 5 months ago
2
Loading pre-extracted feature bags for slide prediction using MIL model in slideflow studio

#349 sz3029 opened 5 months ago
1
[BUG] Dictionary attribute error when using the new `sf.mil.get_mil_tile_predictions` function

#348 sz3029 opened 5 months ago
0
[BUG FIX] Zeiss .czi files not loading, pyvips error

#347 skochanny closed 6 months ago
1
[BUG] TypeError: object.__init__() takes exactly one argument

#346 jamesdolezal closed 6 months ago
0
Histogan

#345 fmhoward opened 6 months ago
0
Version 2.3.0

#344 jamesdolezal closed 6 months ago
0
Small fix: flip mask in outsu if `roi_method == outside`

#340 matte-esse closed 6 months ago
0
Neptune utils for version 2.2.0

#338 luiscarm9 closed 4 months ago
1
Update training.rst.txt

#337 luiscarm9 closed 7 months ago
1
[HistoSSL/heatmaps] MIL model attention heatmaps display bright lines when use histoSSL as the feature extractor

#336 sz3029 closed 7 months ago
4
Update dataloaders.rst.txt

#335 luiscarm9 closed 7 months ago
1
[BUG] File path cannot be properly resolved on Windows

#334 Mr-Milk opened 7 months ago
1