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jeffersonfparil
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compare_genomes
A comparative genomics workflow using Nextflow, conda, Julia and R
GNU General Public License v3.0
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grep: GSTU13_CAFE_results/Gamma_clade_results.txt: No such file or directory
#22
gdmdxl
opened
3 months ago
0
Extracting species specific gene families expansion and contraction
#21
bijendrabio
opened
3 months ago
0
How to visualize GO term enrichment analysis output?
#20
bijendrabio
opened
3 months ago
2
assess_specific_genes.nf fails to open ORTHOGROUPS_SINGLE_GENE.NT.treefile
#19
Keevai09
opened
5 months ago
2
cannot open file 'CAFE_results/Gamma_clade_results.txt': No such file or directory
#18
gdmdxl
closed
5 months ago
2
RE: 4DTv and WGD
#17
Malabady
opened
5 months ago
5
Can't generate venn diagram with R script
#16
jacquelinemattos
opened
6 months ago
5
assess_specific_genes is taking days
#15
Malabady
opened
6 months ago
6
cannot open file 'ORTHOGROUPS_SINGLE_GENE.NT.timetree.nex': No such file or directory
#14
jacquelinemattos
opened
6 months ago
17
Suitable for no model organisms?
#13
kamalmdmostafa
opened
10 months ago
3
Diagnosing pipeline failure
#12
jsoghigian
opened
10 months ago
11
Error on test dataset
#11
jsoghigian
closed
11 months ago
4
Error executing process > 'PLOT'
#10
StepanSaenko
opened
1 year ago
32
Performance assessment on polyploid genomes
#9
jeffersonfparil
opened
1 year ago
0
HyPhy integration for more efficient detection of signatures of selection on gene sequences
#8
jeffersonfparil
opened
1 year ago
0
Allow for PANTHER databases to be linked instead of downloaded
#7
jeffersonfparil
closed
1 year ago
0
Process `PLOT` terminated with an error exit status (1)
#6
papelypluma
closed
1 year ago
39
Revisions and improvements
#5
jeffersonfparil
closed
1 year ago
0
Rerunning from orthogroups appends species names to protein sequence names which conflicts with downstream module expectations of
#4
jeffersonfparil
closed
1 year ago
1
Improve documentation and debug Venn diagram plotting
#3
jeffersonfparil
closed
1 year ago
3
Make use of Nextflow's IO more effectively
#2
jeffersonfparil
opened
1 year ago
0
Create LICENSE
#1
jeffersonfparil
closed
1 year ago
0