jfear ncbi_remap issues

jfear / ncbi_remap

This is the drosSRA project, where we are remapping all Drosophila melanogaster RNA-seq data to FlyBase release 6 and updating annotations.

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Refactor rnaseq wf

#122 jfear closed 4 years ago
0
Refactor fastq-wf and prealn-wf

#121 jfear closed 4 years ago
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Clean up small samples

#120 jfear closed 4 years ago
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Adds libsize filter to initialization.

#119 jfear closed 4 years ago
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More ascii cleaning

#118 jfear closed 4 years ago
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Add better fastq handling

#117 jfear closed 4 years ago
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Biometa revive

#116 jfear closed 4 years ago
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Updated figure1.

#115 jfear closed 4 years ago
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Shap paper

#114 jfear closed 4 years ago
0
Isolation Forest model selection

#113 jfear closed 4 years ago
1
Fix queue

#112 jfear closed 4 years ago
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Queue Bug when passing mixed types

#111 jfear closed 4 years ago
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Finalization of Isolation Forest Workflow

#110 jfear closed 4 years ago
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RNA-Seq Workflow Migration.

#109 jfear closed 4 years ago
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Rnaseq singularity

#108 jfear closed 4 years ago
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Adds chrom_convert script.

#107 jfear closed 4 years ago
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Library strategy wf update

#106 jfear closed 4 years ago
0
Singularity

#105 jfear closed 4 years ago
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Agg prealn wf

#104 jfear closed 4 years ago
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Adds fastq-dump.

#103 jfear closed 4 years ago
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Agg rnaseq wf

#102 jfear closed 4 years ago
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Change aln wf to rnaseq wf

#101 jfear closed 4 years ago
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Add exon counts

#100 jfear closed 4 years ago
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Starts to integrate fastq-wf and Queue systeml

#99 jfear closed 4 years ago
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Aln wf add fastq wf

#98 jfear closed 4 years ago
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Starts new FASTQ download workflow.

#97 jfear closed 4 years ago
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Cleans up references in aln-wf.

#96 jfear closed 4 years ago
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New aln queue

#95 jfear closed 4 years ago
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Feature panel

#94 jfear closed 4 years ago
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Adds Isolation score panel.

#93 jfear closed 4 years ago
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Updates to include outliers.

#92 jfear closed 4 years ago
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Add flags to panel

#91 jfear closed 4 years ago
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Change to use parquet format instead of tsv.

#90 jfear closed 4 years ago
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Add scaler

#89 jfear closed 4 years ago
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Adds facetgrid of umaps.

#88 jfear closed 4 years ago
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Starting to look at outliers.

#87 jfear closed 4 years ago
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Replaced other with OTHER.

#86 jfear closed 4 years ago
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Umap projections

#85 jfear closed 4 years ago
0
Moves intergenic code to script.

#84 jfear closed 4 years ago
0
Moves exon segmentation and fusion to aln-wf.

#83 jfear closed 4 years ago
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Updates library strategy metadata improvement.

#82 jfear closed 4 years ago
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Refactor segmentation

#81 jfear closed 4 years ago
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Builds exons segments.

#80 jfear closed 4 years ago
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Check lib strat

#79 jfear closed 4 years ago
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Renames metadata-wf to library_strategy-wf.

#78 jfear closed 5 years ago
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Update conda

#77 jfear closed 5 years ago
0
Update fq dump

#76 jfear closed 5 years ago
0
Update fastq-dump

#75 jfear closed 5 years ago
1
Move outputs

#74 jfear closed 6 years ago
0
Makes library pip installable.

#73 jfear closed 6 years ago
0