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jfear
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ncbi_remap
This is the drosSRA project, where we are remapping all Drosophila melanogaster RNA-seq data to FlyBase release 6 and updating annotations.
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Run priority
#72
jfear
closed
6 years ago
0
Restruct corr
#71
jfear
closed
6 years ago
0
Developmental Time Course
#70
jfear
closed
4 years ago
0
Fix aln print
#69
jfear
closed
6 years ago
0
Fix prealn print
#68
jfear
closed
6 years ago
0
Adds new lcdb-wf requirements.
#67
jfear
closed
6 years ago
0
Update website
#66
jfear
closed
6 years ago
0
Srr corr
#65
jfear
closed
6 years ago
0
Adds website workflow.
#64
jfear
closed
6 years ago
0
Reorganize notebooks
#63
jfear
closed
6 years ago
0
Genome size
#62
jfear
closed
7 years ago
0
Adds notebook helpers and styles.
#61
jfear
closed
7 years ago
0
Refactor aln wf
#60
jfear
closed
7 years ago
0
Refactor prealignment
#59
jfear
closed
7 years ago
0
Genome coverage
#58
jfear
closed
7 years ago
0
Dump ids
#57
jfear
closed
7 years ago
0
Adds notebook to make LAYOUT.
#56
jfear
closed
7 years ago
0
Updating figure for use in my data club presentation.
#55
jfear
closed
7 years ago
0
Re-run missing files
#54
jfear
closed
6 years ago
0
Estimate Effective Genome Size
#53
jfear
closed
7 years ago
0
Correlation downstream analysis
#52
jfear
closed
7 years ago
0
Sample Correlation Downstream Analysis
#51
jfear
closed
7 years ago
0
Library Complexity
#50
jfear
closed
6 years ago
0
Adds notebook for read length analysis.
#49
jfear
closed
7 years ago
0
Read Length Downstream Analysis
#48
jfear
closed
7 years ago
0
Contamination downstream analysis
#47
jfear
closed
7 years ago
0
Read Quality Downstream Analysis
#46
jfear
closed
7 years ago
1
Mapping downstream
#45
jfear
closed
7 years ago
0
Contamination Downstream Analysis
#44
jfear
closed
7 years ago
1
Mapping Quality Downstream Analysis
#43
jfear
closed
7 years ago
0
Adds initial libsize notebook.
#42
jfear
closed
7 years ago
0
Summarize library size
#41
jfear
closed
7 years ago
0
Strandedness Downstream Analysis
#40
jfear
closed
7 years ago
0
Strandedness
#39
jfear
closed
7 years ago
0
adds full list of modENCODE.
#38
jfear
closed
7 years ago
0
RNA-seq priority
#37
jfear
closed
7 years ago
0
FlyBase Annotation
#36
jfear
closed
6 years ago
0
Alignment Workflow
#35
jfear
closed
6 years ago
0
Pre-alignment workflow
#34
jfear
closed
6 years ago
0
Add idxstats
#33
jfear
closed
7 years ago
2
Break down samples based on tissue/dev_stage/cell_type
#32
jfear
closed
6 years ago
0
Create junction counts and normalized bigwigs for S2 cells.
#31
jfear
closed
6 years ago
0
Identify high quality RNA-seq samples in SRA.
#30
jfear
closed
6 years ago
0
Remove bam stat
#29
jfear
closed
7 years ago
0
Remove bam_stat and rseqc from pre alignment workflow.
#28
jfear
closed
7 years ago
1
Do I really want bam stat?
#27
jfear
closed
7 years ago
3
Removes infer_experiment from pre-alignment workflow.
#26
jfear
closed
7 years ago
0
Remove rseqc infer_experiment from workflow.
#25
jfear
closed
7 years ago
0
Hotfix hisat2 rename
#24
jfear
closed
7 years ago
0
Add samtools idxstats to db.
#23
jfear
closed
7 years ago
1
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