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jn-goe
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gruffi
Granular Functional Filtering (Gruffi) to isolate stressed cells
GNU General Public License v3.0
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Error in scBarplot.CellFractions: custom_col_palette is wrongly handled.
#23
vertesy
opened
2 hours ago
1
CalculateAndPlotGoTermScores() should save the name of the GO term
#22
vertesy
opened
1 month ago
0
Plotting in FindThresholdsAuto() should be implmented, and be equivalent to FindThresholdsShiny()
#21
vertesy
closed
8 months ago
0
Granule average score should be stored as numeric, not factor (AssignGranuleAverageScoresFromGOterm).
#20
vertesy
closed
8 months ago
1
AssignGranuleAverageScoresFromGOterm fails at DOSE::geneInCategory() if obj@misc$gruffi$GO$GO.XXX is alredy present
#19
vertesy
closed
8 months ago
1
GOScoreEvaluation fails because the faulty implementation of the mirror option.
#18
bobermayer
closed
8 months ago
5
clusterprofiler / ensembl / AnnotationDbi
#17
vertesy
closed
8 months ago
1
Merge pull request #15 from jn-goe/adapting_for_changes_in_Stringendo
#16
vertesy
closed
8 months ago
0
Adapting for changes in stringendo
#15
vertesy
closed
8 months ago
0
useEnsembl() version problem
#14
vertesy
closed
8 months ago
1
R and packages version?
#13
PSobrevalsAlcaraz
closed
8 months ago
12
Ensembl mirror argument added
#12
zuzkamat
closed
8 months ago
6
GO_score_evaluation error with Idents
#11
lindaboshans
closed
1 year ago
1
Error message related with Idents
#10
ibassets
closed
1 year ago
3
Still unclear how to install
#9
michallipinski
closed
1 year ago
1
Dimplot split by stressed vs no stressed to deal with overplotting
#8
vertesy
closed
8 months ago
0
Implement an autostop mode for gruffi
#7
heylf
closed
8 months ago
8
Automatic execution of Shiny app
#6
heylf
closed
8 months ago
3
ensembl version is not fixed and not specified in GetGoTerms()
#5
vertesy
closed
1 year ago
0
How important is it to have negative filters
#4
deevdevil88
closed
2 years ago
3
i cannot seem to load the package
#3
deevdevil88
closed
2 years ago
2
Unable to load package
#2
wk-chan
closed
2 years ago
5
Unable to call Shiny app for GO thresh
#1
wk-chan
closed
2 years ago
2