jokergoo rGREAT issues - Githubissues

jokergoo / rGREAT

GREAT Analysis - Functional Enrichment on Genomic Regions

https://jokergoo.github.io/rGREAT

Other

80 stars 11 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

The description of function great() has an error

#54 CocoConstant opened 1 month ago
0
input conversion error in submitGreatJob

#53 dlukacso opened 2 months ago
0
Error in submitGreatJob

#52 ashishjain1988 opened 4 months ago
0
Error in submitGreatJob(gr = gr, bg = bg, species = species)

#51 emanuelavilla opened 5 months ago
3
Statistics with explicitly defined background

#50 OrangeyO2 opened 5 months ago
0
adjustment of p-value sensitivity in enrichment table results?

#49 andvon opened 5 months ago
0
Explanation of GO results columns

#48 acv21 opened 7 months ago
1
shinyreport

#47 jokergoo opened 7 months ago
0
difference between online and local GREAT analysis

#46 wbvguo closed 5 months ago
2
max gene set size

#45 wbvguo opened 8 months ago
1
Suggestion: adding GO ID to local great?

#44 jiayiliujiayi closed 10 months ago
2
getRegionGeneAssociations function not called

#43 adamxmiranda opened 11 months ago
0
[question] how can i convert the shinyReport to local html file or pdf

#42 champeil opened 12 months ago
1
[Request] Support for genomes beyond GenomeInfoDb's seqlevelsStyle

#41 asgeissler opened 1 year ago
3
gene_sets

#40 alkurowska opened 1 year ago
0
different enrichment results between rGREAT and the web-based tool

#39 Dragonlongzhilin opened 1 year ago
1
Include name field in results table

#38 jeremymsimon closed 1 year ago
2
Multiple gene sets in one go?

#37 zqzneptune closed 1 year ago
2
by default support KEGG gene sets

#36 jokergoo opened 1 year ago
0
Explanation of result columns

#35 dktanwar closed 1 year ago
2
Cannot download enrichment tables with associated genes with version 3

#34 coolleen516 opened 1 year ago
1
mouse phenotype

#33 malonzm1 closed 1 year ago
2
intersect genes in gene sets and in tss

#32 jokergoo closed 1 year ago
0
rGREAT Service Unavailable: Operation timed out

#31 apblair opened 2 years ago
3
rGREAT against scaffold / unassembled chromosomes

#30 MafGal closed 1 year ago
7
The `getEnrichmentTables` only prints first 500 lines

#29 aseetharam closed 2 years ago
2
hg38 not available for version 2.0 or 3.0

#28 TerezaClarence closed 2 years ago
1
Ensembl IDs

#27 rjoana1 closed 2 years ago
2
plotRegionGeneAssociationGraphs error

#26 dougbarrows closed 3 years ago
2
How to infer the seqinfo message from the output of rGREAT::plotRegionGeneAssociationGraphs ?

#25 peranti closed 2 years ago
4
difference in the packge given results compared to the web-based tool

#24 peranti closed 3 years ago
2
Retrieving plots from the plotRegionGeneAssociationGraphs function

#23 peranti closed 3 years ago
5
Handling large data sets beyond the limits of allowed File size

#22 peranti closed 2 years ago
2
can't retrieve genes per categories using download_by argument

#21 Brawni closed 3 years ago
2
automatically retrieve all associated genes and put into the enrichment table

#20 jokergoo closed 4 years ago
0
GREAT database

#19 dktanwar closed 4 years ago
1
use MSigDB database with rGREAT tool

#18 andreaT87 closed 4 years ago
3
termID = "GO:0007165" for signal transduction is not working

#17 biobug16 closed 4 years ago
1
support GREAT version 4.0.4

#16 jokergoo closed 4 years ago
0
database connection issues

#15 jk86754 closed 5 years ago
14
Cannot use plotRegionGeneAssociationGraphs for specific term ID when using background

#14 mooratov closed 4 years ago
8
Check/remove contigs in the input bed

#13 NagaComBio closed 5 years ago
1
retrieve genes associated to phenotypes/diseases

#12 ilibarra closed 5 years ago
5
send regions as file instead of text

#11 jokergoo closed 6 years ago
0
input size restriction problem

#10 Pickledzebra closed 5 years ago
10
help please?

#9 Pickledzebra closed 6 years ago
7
Latest Version Causes Error with Background Set

#8 imk1 closed 7 years ago
4
error when providing background set

#7 yzhang12 closed 7 years ago
4
Error in submitGreatJob(gr) : lazy-load database '/Users/mtang1/Library/R/3.2/library/GetoptLong/R/GetoptLong.rdb' is corrupt

#6 crazyhottommy closed 8 years ago
2
Fix some background region annotations

#5 semenko closed 8 years ago
2