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jonahcullen
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wags
GNU General Public License v3.0
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mv recommended edit - sv.smk
#50
mike2vandy
opened
5 days ago
0
GVCFs to VCFs Cat FCA126_mat1.0
#49
gwigley409
opened
2 weeks ago
2
Update final_output.smk to conform to new xlsxwriter syntax
#48
Hexive-UN-03
opened
1 month ago
0
Add the ability to process single-end reads
#47
kdimmler2
closed
2 weeks ago
0
Delete hanging )
#46
Hexive-UN-03
opened
1 month ago
0
explicit directory locations of slurm_logs and cd in one_wag job script
#45
Hexive-UN-03
closed
2 months ago
0
mv edit test
#44
mike2vandy
opened
3 months ago
0
Mv lsf changes
#43
jonahcullen
closed
3 months ago
0
Error with one_wag
#42
tori-rudolph
closed
6 months ago
10
Failure executing gater_unfltr_vcf in ManyWAGS
#41
gwigley409
closed
7 months ago
15
Error when running one_wag.slurm
#40
gwigley409
closed
8 months ago
5
CanFam4 Dictionary Missing?
#39
epersoon
closed
4 months ago
4
Failure executing fastqs_to_ubam rule in Snakemake workflow
#38
sachin-subedi
closed
11 months ago
58
Error: index 0 is out of bounds for axis 0 with size 0
#37
sachin-subedi
closed
1 year ago
0
Setting variables for prep_subs.py
#36
sachin-subedi
closed
1 year ago
5
Check input.tsv completeness warning
#35
jonahcullen
opened
1 year ago
0
Using prep_custom_ref.py
#34
sachin-subedi
closed
1 year ago
2
HPC scheduler is LSF :(
#33
benyoung93
opened
1 year ago
6
To see all reference genome
#32
sachin-subedi
closed
1 year ago
6
Cat ref genome issue
#31
melbarb12
closed
1 year ago
2
Critical libmamba error
#30
aubreyfrazior
closed
1 year ago
7
snakemake version issue
#29
epersoon
closed
1 year ago
1
Prep custom ref
#28
jonahcullen
opened
1 year ago
0
New methodology for single-sample genotyping to replace current
#27
jonahcullen
opened
1 year ago
0
User custom VQSR inputs
#26
jonahcullen
opened
1 year ago
0
User custom BQSR inputs
#25
jonahcullen
opened
1 year ago
0
Local profile
#24
jonahcullen
opened
1 year ago
0
Prep custom ref issues
#23
jonahcullen
opened
1 year ago
0
Joint genotype misc
#22
jonahcullen
opened
1 year ago
0
collapse_interval documentation and option for target size
#21
jonahcullen
opened
1 year ago
0
Dumping chrUn from joint calling
#20
jonahcullen
opened
1 year ago
0
Money run with pop argumen
#19
jonahcullen
opened
1 year ago
0
Convert final_output from money to shell
#18
jonahcullen
opened
2 years ago
0
Add tranche plot generation to the joint pipeline
#17
jonahcullen
opened
2 years ago
0
Add AnalyzeCovariates
#16
jonahcullen
closed
2 years ago
1
Get BWA version for alignment rule to add to BAM
#15
jonahcullen
opened
3 years ago
0
Add fastqc rule
#14
jonahcullen
closed
2 years ago
1
Copy select output to primary for upload to s3
#13
jonahcullen
closed
2 years ago
1
Get group ID
#12
jonahcullen
opened
3 years ago
0
Notes for README
#11
jonahcullen
opened
3 years ago
0
Add bcftools stats to final output of joint_genotyping
#10
jonahcullen
opened
3 years ago
0
Add "vep" and date to output from vep rule
#9
jonahcullen
opened
3 years ago
0
Don't send all table to final directory
#8
jonahcullen
opened
3 years ago
0
Separate vep and bgzip/tabix
#7
jonahcullen
opened
3 years ago
0
Modify output names to distinguish between pre- and post-vep annotation
#6
jonahcullen
opened
3 years ago
0
Add SNP_ and INDEL_recal plots
#5
jonahcullen
opened
3 years ago
0
Fix collect metrics
#4
jonahcullen
opened
3 years ago
0
Remove SortVCF
#3
jonahcullen
opened
3 years ago
0
Log times
#2
jonahcullen
closed
2 years ago
1