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jorvis
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biocode
Bioinformatics code libraries and scripts
MIT License
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Issue with convert prodigal output to standard GFF3
#83
jjuradoc
opened
1 month ago
4
Python upgrade/conversion?
#82
RPINerd
closed
5 months ago
1
change python-igraph to igraph
#81
szhorvat
closed
1 year ago
1
Update fasta_size_report script to python3.10
#80
RPINerd
closed
1 year ago
2
Keep introns
#79
christopher-holt
opened
1 year ago
4
change the lines
#78
Mona-2022
closed
2 years ago
0
rename fasta headers with regex
#77
CSynodinos
opened
2 years ago
2
[convert_genbank_to_gff3.py] No Locus_tag present in my genbank file
#76
j-bacal
closed
2 years ago
2
fasta/fasta_simple_stats.py fails on any file with only one sequence
#75
jorvis
closed
3 years ago
0
product info not printout in tbl
#74
shuhailaMSR
opened
3 years ago
2
biocode error
#73
shuhailaMSR
closed
3 years ago
16
Formatting Issue?
#72
remiketchum
opened
3 years ago
2
remove the obsolete TODO comment
#71
beyondacm
closed
3 years ago
1
Incorrect parent features from convert_tRNAScanSE_to_gff3.pl
#70
14zac2
opened
3 years ago
2
Update convert_tRNAScanSE_to_gff3.pl
#69
pgonzale60
closed
3 years ago
0
Update convert_tRNAScanSE_to_gff3.pl
#68
pgonzale60
closed
3 years ago
3
convert_gff_to_ncbi_tbl.py
#67
stanislasmorand
closed
3 years ago
3
convert_gff3_to_ncbi_tbl.py
#66
stanislasmorand
closed
3 years ago
2
Conda based install
#65
nhartwic
opened
5 years ago
2
convert_augustus_to_gff3.py error
#64
JingXia730
closed
5 years ago
6
Insert EC numbers into chado database issue
#63
nsuvarnaiari
closed
5 years ago
5
AttributeError: 'Gene' object has no attribute 'add_CDS'
#62
PlantDr430
closed
5 years ago
4
AttributeError: type object 'str' has no attribute 'maketrans'
#61
PengXieAMJ
closed
5 years ago
2
[convert_genbank_to_gff3.py] key_error: locus_tag
#60
Piplopp
opened
5 years ago
5
Create gff3_to_bed_II
#59
SageCode98
opened
5 years ago
1
Biocode.gff module error
#58
PlantDr430
closed
5 years ago
2
Attribute error for update_selected_column9_values.py
#57
gjaqu054
closed
6 years ago
1
Exclude mRNA features in bacterial TBL exports
#56
jorvis
opened
6 years ago
0
Syntax error on gff.py
#55
PlantDr430
closed
6 years ago
4
convert_gff3_to_ncbi_tbl
#54
bernt-matthias
opened
6 years ago
5
NameError: name 'utils' is not defined
#53
arsilan324
closed
6 years ago
13
correct_gff_feature_order.pl doesn't work
#52
arsilan324
closed
6 years ago
5
Augustus conversion failing
#51
jorvis
opened
6 years ago
5
Resolve competing functions to serialize GFF3
#50
jorvis
closed
6 years ago
1
pip2 install biocode error
#49
kayDaramola
closed
6 years ago
10
Added parsing for predicted introns and anticodon
#48
JWDebler
closed
6 years ago
2
Bug fix duplicated genes when converting Genbank into GFF.
#47
ArnaudBelcour
closed
7 years ago
1
Bug fix polypeptide.locations typechecking
#46
ktmeaton
closed
7 years ago
2
convert_gff3_to_gbk.py template error
#45
BenjaminSchwessinger
closed
7 years ago
4
write_fasta_from_gff.py error
#44
ncpalmateer
closed
7 years ago
5
Can't import things with write_fasta_from_gff.py
#43
ktretina
closed
7 years ago
6
Add py2 compatability to fastq subsample script
#42
kastman
closed
7 years ago
0
convert_gff3_to_ncbi_tbl.py error generated
#41
wyim-pgl
closed
7 years ago
2
Python 2 Compatability?
#40
kastman
closed
8 years ago
1
Add fasta/subsample_fasta.py and sandbox/jcrabtree.
#39
jonathancrabtree
closed
8 years ago
0
Minor fasta script naming issue
#38
jonathancrabtree
closed
8 years ago
1
problem with compare_gene_structures.py
#37
lfaino
closed
7 years ago
2
Script needed for assembly evaluation
#36
jorvis
opened
8 years ago
1
To extract longest isoform from trinity assembly
#35
bioinfonext
closed
9 years ago
3
Fixes for parsing of GFF3 ##FASTA section. Closes #32.
#34
jonathancrabtree
closed
9 years ago
1
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