jorvis biocode issues - Githubissues

jorvis / biocode

Bioinformatics code libraries and scripts

MIT License

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convert_metagenemark_gff_to_gff3.py produces invalid GFF3

#33 jonathancrabtree closed 9 years ago
1
write_fasta_from_gff.py silently ignores a (potentially large) portion of the input gff

#32 jonathancrabtree closed 9 years ago
2
Add descriptions to ArgumentParser definitions

#31 mfitzp closed 9 years ago
2
biocodeutils.py add error output mRNA ID

#30 ktretina opened 10 years ago
0
correct_gff_feature_order.pl misplacing ##FASTA

#29 ktretina opened 10 years ago
0
write_fasta_from_gff.pl

#28 ktretina closed 10 years ago
1
bioannotation.py - check for properly-formed EC numbers

#27 jorvis closed 10 years ago
2
convert_gff3_to_gbk.py, convert sequences with no annotation

#26 jonathancrabtree opened 10 years ago
0
Check and/or correct coordinate column order in biocodegff.py

#25 jonathancrabtree closed 10 years ago
2
convert_gff3_to_gbk.py, add full support for non-protein-coding genes

#24 jonathancrabtree closed 4 years ago
8
Add --locus_id_prefix to convert_gff3_to_gbk.py

#23 jonathancrabtree closed 10 years ago
0
report_gff_intron_and_intergenic_stats.py error message Detected assembly with undefined or 0 length

#22 cmccracken closed 10 years ago
1
Improved option handling

#21 jonathancrabtree closed 10 years ago
0
Add --lineage, --include_sequence, and --output_dir to convert_gff3_to_gbk.py

#20 jonathancrabtree closed 10 years ago
3
report_gc_content_by_feature_type.pl definition of telomere

#19 ktretina closed 10 years ago
1
shorter than real intergenic space in "report_gff_intron_and_intergenic_stats.py"

#18 pezhmansafdari closed 10 years ago
4
GFF3 validator

#17 ktretina opened 10 years ago
1
report_gff3_statistics.py, 'Gene' object has no attribute 'length'

#16 pezhmansafdari closed 10 years ago
2
convert_gff3_to_gbk.py with no embedded FASTA

#15 ktretina opened 10 years ago
0
Model UTRs explicitly

#14 jorvis opened 10 years ago
2
Annotation parsing file output options

#13 mchibucos opened 10 years ago
0
The biothings module needs to support multiple parentage

#12 jorvis opened 10 years ago
0
Add motif predictions to parse_ergatis_euk_functional_pipeline.py

#11 mchibucos opened 10 years ago
0
gff/write_fasta_from_gff.pl mistranslates some Augustus -> GFF3 output

#10 jorvis opened 10 years ago
0
report_gff3_statistics.py unsupported operand type(s) error

#9 mchibucos opened 10 years ago
0
Needed: Speed-optimized FASTQ to FASTA script

#8 jorvis closed 10 years ago
1
Needed: Speed-optimized FASTA statistics script

#7 jorvis opened 10 years ago
0
Needed: Speed-optimized FASTQ statistics script

#6 jorvis opened 10 years ago
1
Structural comparison script deletes all bed files

#5 jorvis closed 9 years ago
3
Corrected link to the khmer implementation of diginorm

#4 mr-c closed 11 years ago
0
Modified structural comparison script

#3 priti88 closed 11 years ago
0
Added documentation

#2 priti88 closed 11 years ago
0
added author information

#1 priti88 closed 11 years ago
0