jsherfey dnsim issues - Githubissues

jsherfey / dnsim

Dynamic Neural Simulator - a modular modeling tool for large ODE systems.

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"Errors" in regular expressions?

#70 asoplata opened 8 years ago
0
Add a Gitter chat badge to README.md

#69 gitter-badger closed 8 years ago
0
Simulation size not scaling very high

#68 asoplata opened 8 years ago
1
Resolve #63: Prune graveyard and unused code

#67 asoplata closed 8 years ago
0
Current 'dev' simstudy using coder + cluster = broken?

#66 asoplata opened 8 years ago
5
Remove duplicate functions

#65 asoplata opened 8 years ago
2
Deprecated function `buildmodel2()` still used

#64 asoplata opened 9 years ago
1
Pruning archaic/deprecated code: Unused functions and Graveyard-commented-code

#63 asoplata opened 9 years ago
4
Odefun varsize preallocation

#62 kupiqu closed 9 years ago
0
Fix #60: Add option for non-Timesurfer format data

#61 asoplata closed 9 years ago
0
New data format flag 'timesurfer_flag' not passed from simstudy() to runsim()

#60 asoplata opened 9 years ago
0
Fix #58: Set default data save to use -v7.3 flag

#59 asoplata closed 9 years ago
0
Can't save large simulation data w/o -v7.3 flag | Is there a good reason `sim_data`'s -v7.3 save flag is commented out?

#58 asoplata opened 9 years ago
1
Origin/iss0056 ghostscript plot bug

#57 asoplata closed 9 years ago
0
MAJOR bug: (Artifex Ghostscript bug) N>1 multiplicity sims are unable to save DNSIM plots (e.g. voltage) when run on the cluster

#56 asoplata opened 9 years ago
10
Changes that improve usability: 1) params.mat is used whether or not …

#55 kupiqu closed 9 years ago
0
The default reversal potential for an inhibitory synapse is 0 mV?

#54 jchartove closed 9 years ago
4
Simlink files break when copied onto Windows

#53 jchartove opened 9 years ago
1
Fix #48: Add job number precision to odefun file

#52 asoplata closed 9 years ago
3
getting rid of splitstr dependency

#51 kupiqu closed 9 years ago
0
Standarize flag usage

#50 asoplata opened 9 years ago
0
Getting rid of strsplit by using instead splitstr (dnsim dependency)

#49 kupiqu closed 9 years ago
0
Major bug: Jobs run on cluster overwrite OTHER simulations in the same batch

#48 asoplata opened 9 years ago
3
Exponential Synaptic

#47 davestanley opened 9 years ago
4
Jobs run on cluster with identical end filenames (regardless of path) overwrite each other if sent to cluster within a small amount of time

#46 asoplata opened 9 years ago
2
Using custom mechanisms in cluster simulations on fresh install

#45 asoplata opened 9 years ago
1
Choose a license

#44 asoplata opened 9 years ago
0
Iss040 add pacoupling

#43 asoplata closed 9 years ago
0
Plots being saved to disk incorrectly

#42 asoplata opened 9 years ago
0
Spectral analysis figure not saving when DNSIM run without a GUI

#41 asoplata opened 9 years ago
0
Add phase-amplitude coupling analysis

#40 asoplata opened 9 years ago
0
On branch iss002_add_json_output: Per #2, added JSON export.

#39 asoplata closed 9 years ago
0
clean code in buildmodel etc so params.mat is used regardless of coder/codegen

#38 kupiqu opened 9 years ago
0
params.mat mixes up variables of different mechanisms

#37 kupiqu opened 9 years ago
2
different results when new data format is used

#36 kupiqu closed 9 years ago
1
bug in buildmodel.m when coder is set to 1 but codegen is not available

#35 kupiqu closed 9 years ago
2
adjust dt for external functions under R-K

#34 kupiqu closed 9 years ago
3
do not remove m file on errors if mex file exists

#33 kupiqu closed 9 years ago
0
remove codemex dir regardless of debug option

#32 kupiqu closed 9 years ago
0
eliminated inappropriate double substitution of mechanism functions into...

#31 jsherfey closed 9 years ago
0
added downsampled time vector to output data structure

#30 jsherfey closed 9 years ago
0
build-in support for discrete-event simulation

#29 jsherfey opened 9 years ago
0
add variable units to dnsim

#28 kupiqu opened 9 years ago
0
transposed connectivity matrix; this resolves #14

#27 jsherfey closed 9 years ago
0
Dnsim codegen cluster

#26 jsherfey closed 9 years ago
0
doc tests

#25 kupiqu opened 9 years ago
1
Cannot log into infinite brain account on DNSIM GUI

#24 asoplata opened 9 years ago
0
fixed issue on t

#23 kupiqu closed 9 years ago
0
Dnsim codegen

#22 jsherfey closed 9 years ago
0
cannot introduce initial conditions for alpha/beta in activation/inactivation state variables

#21 kupiqu opened 9 years ago
0