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junlabucsd
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napari-mm3
Mother machine image analysis through napari
BSD 3-Clause "New" or "Revised" License
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Is the data incomplete or not in the format expected by the program
#40
zxl555666
opened
1 week ago
5
Napari 0.5.0 incompatible
#39
acJuarez
closed
2 months ago
1
Issues related to napari-mm3 installation
#38
GaoCheng22
closed
1 week ago
9
Merge foci tracking into main
#37
rthiermann
closed
11 months ago
0
Channel picker too wide
#36
ka-1999
closed
1 year ago
4
Improve foci detection
#35
michaels10
opened
1 year ago
0
Add python 3.10 support to tox
#34
michaels10
opened
1 year ago
0
Option to rotate input images for better alignment in compile
#33
rthiermann
opened
1 year ago
1
Remove dependence on TIFFs for parameter extraction
#32
rthiermann
opened
1 year ago
2
Update Annotate widget to allow user-input paths for training data
#31
rthiermann
opened
1 year ago
0
Fix nd2ToTIFF
#30
michaels10
closed
1 year ago
1
Add bioformats support
#29
michaels10
closed
1 year ago
1
Consolidate multiple spec files
#28
michaels10
opened
1 year ago
0
The link to input image guidelines does not work
#27
leebachacko
closed
1 year ago
8
Fill out the unet pipeline
#26
michaels10
closed
1 year ago
1
Improve backwards-compatibility w/Cell class
#25
michaels10
opened
2 years ago
0
Add precommit hooks
#24
michaels10
opened
2 years ago
0
Explore more sophisticated multiprocessing
#23
michaels10
opened
2 years ago
0
Add more sophisticated tests
#22
michaels10
opened
2 years ago
0
Make 'Subtract' use the 'output prefix' parameter.
#21
michaels10
opened
2 years ago
0
Allow FOV and peak changing in Otsu preview.
#20
michaels10
opened
2 years ago
0
Refactor internals to not use params
#19
michaels10
opened
2 years ago
1
Improved loading bars
#18
michaels10
opened
2 years ago
0
Add Interactivity to lineage tracking
#17
michaels10
opened
2 years ago
0
Fix UNet interactivity UI
#16
michaels10
closed
1 year ago
3
Add focus tracking
#15
rthiermann
closed
2 years ago
0
Take subtracted channels as default input
#14
rthiermann
closed
2 years ago
0
Add colors widget
#13
rthiermann
closed
2 years ago
0
Bug fixes
#12
rthiermann
closed
2 years ago
0
Fix bug in fluorescence subtraction
#11
rthiermann
closed
2 years ago
0
Add support for TIFFs without metadata
#10
rthiermann
closed
2 years ago
0
Add more tooltips, split segment_unet
#9
rthiermann
closed
2 years ago
0
Add tooltips, QoL changes, and cross-correlations in the channel picker.
#8
michaels10
closed
2 years ago
0
Pull nd2 exporter and compile steps out of _function.py. Remove unused files.
#7
michaels10
closed
2 years ago
0
Single click channel selection; migrate channelpicker to magicgui
#6
michaels10
closed
2 years ago
0
Add drop-down menus, regionprops bug fix
#5
rthiermann
closed
2 years ago
0
New channel picker and annotation widgets, revised workflow
#4
rthiermann
closed
2 years ago
0
Update feretdiameter and remove unused functions
#3
ahirsharan
closed
2 years ago
0
added lineage plotting
#2
mcasebee
closed
2 years ago
0
napari magicgui testing
#1
mcasebee
closed
2 years ago
1