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junyangq
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snpnet
snpnet: Fast and scalable lasso/elastic-net solver for large SNP data
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Corr
#42
ChrisTho23
closed
2 months ago
0
How run snpnet without penalizing covariates?
#41
annilk
opened
3 months ago
0
Is there any application of BASIL on non-SNP data?
#40
WeiCSong
opened
2 years ago
0
Error: Problem with `mutate()` column `stats_means`.
#39
julibeg
opened
3 years ago
0
gfortran error: Bad CPU type in executable
#38
garyzhubc
closed
3 years ago
2
Memory issues
#37
privefl
opened
3 years ago
7
Invalid --memory argument (with negative value).
#36
privefl
opened
3 years ago
0
LD pruning
#35
gustavahlberg
opened
4 years ago
0
Can snpnet be used on bed files directly?
#34
privefl
closed
3 years ago
7
Update functions.R
#33
marivascruz
closed
4 years ago
0
Add elastic-net support
#32
junyangq
closed
4 years ago
0
Error running vignette
#31
P-Rafter
closed
2 years ago
3
`compute.summary.stats`
#30
yk-tanigawa
closed
4 years ago
0
Accelerate computeStats with plink2 --geno-counts
#29
yk-tanigawa
closed
4 years ago
0
Update snpnet.R
#28
yk-tanigawa
closed
4 years ago
1
license of the package
#27
NKweiwang
closed
5 years ago
1
UKB pipeline
#26
mxcai
opened
5 years ago
1
Fix predict function used in glmnet/Plus
#25
junyangq
closed
5 years ago
0
Change to a more standard format FID and IID
#24
junyangq
closed
5 years ago
0
Remove chunkSize and import Rcpp
#23
junyangq
closed
5 years ago
0
Update package doc
#22
junyangq
closed
5 years ago
0
Fix documentation and description file
#21
junyangq
closed
5 years ago
0
Improved output messages and documentation
#20
junyangq
closed
5 years ago
0
update snpnet.R to check early stopping condition immediately after l…
#19
yk-tanigawa
closed
4 years ago
1
Early stopping with --prevIter
#18
yk-tanigawa
closed
4 years ago
1
Fix empty covariate and prevIter > 0
#17
junyangq
closed
5 years ago
0
Update snpnet.R -- a patch for issue:
#16
yk-tanigawa
closed
5 years ago
1
`--prevIter` option does not work when covariates are empty list and specify validation set
#15
yk-tanigawa
closed
5 years ago
3
Update snpnet.R
#14
yk-tanigawa
closed
5 years ago
0
Fix issue of empty covariates and add aggressive KKT check
#13
junyangq
closed
5 years ago
0
bugfix: glm function predict does not accept data frame or data table…
#12
yk-tanigawa
closed
5 years ago
0
Apply a minor update
#11
yk-tanigawa
closed
5 years ago
1
Update codes & sample data
#10
yk-tanigawa
closed
5 years ago
1
Update BEDMatrixPlus.cpp
#9
yk-tanigawa
closed
5 years ago
0
Update snpnet.R
#8
yk-tanigawa
closed
5 years ago
0
Update snpnet.R (file.path instead of paste0)
#7
yk-tanigawa
closed
5 years ago
1
Both FID and IID should be used for identifier for individuals
#6
yk-tanigawa
closed
5 years ago
1
Speed up matrix multiplication
#5
junyangq
closed
5 years ago
0
Update DESCRIPTION
#4
yk-tanigawa
closed
5 years ago
0
Update .gitignore
#3
yk-tanigawa
closed
5 years ago
0
change .gitignore
#2
junyangq
closed
5 years ago
0
Remove dependency on a modified version of BEDMatrix
#1
junyangq
closed
5 years ago
0