kalekundert stepwise issues

kalekundert / stepwise

Modular, command-line scientific protocols

GNU General Public License v3.0

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Can end up with multiple mixes named "master" when using `AutoMix`

#74 kalekundert opened 2 years ago
0
Add "output suffix" option to `sw go`

#73 kalekundert closed 2 years ago
0
Add commands to skip previous steps

#72 kalekundert closed 2 years ago
0
Represent protocol steps as a task graph

#71 kalekundert opened 2 years ago
4
Give protocols a "warnings" section

#70 kalekundert opened 2 years ago
1
specify number of reactions to setup on last step if replicates are requested

#69 kalekundert closed 2 years ago
0
Allow non-linear master mix setups

#68 kalekundert closed 2 years ago
0
Option to group reagent in master mixes

#67 kalekundert opened 2 years ago
1
Easily specify protocol links and footnotes for reactions

#66 kalekundert opened 2 years ago
0
Share column widths between reaction tables in `Reactions`

#65 kalekundert opened 2 years ago
1
Option to calculate master mix stock concentrations

#64 kalekundert closed 2 years ago
0
Add a wellmap plugin

#63 kalekundert opened 2 years ago
0
Teach `Reactions` about replicates

#62 kalekundert closed 2 years ago
0
Allow reactions to set multiple scales

#61 kalekundert closed 2 years ago
0
Refactor `Reaction`

#60 kalekundert closed 2 years ago
1
Allow multi-step master mixes

#59 kalekundert closed 2 years ago
1
Refactor the internal protocol representation

#58 kalekundert opened 2 years ago
0
Allow reactions to mix units

#57 kalekundert opened 2 years ago
0
Merge identical footnotes

#56 kalekundert closed 3 years ago
1
Changing a reagent key should not affect ordering

#55 kalekundert closed 2 years ago
0
Make it possible to convert between reagents and solvents

#54 kalekundert closed 2 years ago
1
Fix coveralls

#53 kalekundert opened 3 years ago
0
Allow protocols to output directly to stdout

#52 kalekundert opened 3 years ago
1
Match partial preset names

#51 kalekundert opened 3 years ago
0
`step`: specify paragraphs/list items using positional arguments

#50 kalekundert opened 3 years ago
0
Parse config schema from usage text

#49 kalekundert opened 3 years ago
1
Allow a preset to inherit from a preset with the same name

#48 kalekundert closed 3 years ago
0
Better error message for non-existent preset names

#47 kalekundert opened 3 years ago
0
Add a `definition_list` formatting object

#46 kalekundert closed 3 years ago
3
Standardized way of specifying reagents

#45 kalekundert opened 3 years ago
0
Allow numbers and spaces in units

#44 kalekundert opened 3 years ago
1
`sw step`: Add syntax for specifying subsubsteps

#43 kalekundert closed 3 years ago
0
Add a `reaction` command

#42 kalekundert closed 3 years ago
0
Can't use `sw note` after protocol that uses `Step` objects.

#41 kalekundert closed 3 years ago
0
Print usage text (i.e. --help) to stderr

#40 kalekundert closed 3 years ago
0
Don't check footnotes until protocol is printed?

#39 kalekundert opened 3 years ago
2
Don't count indentical protocols as duplicates

#38 kalekundert opened 4 years ago
0
Allow adding objects with a 'protocol' attribute to protocols.

#37 kalekundert closed 2 years ago
1
Accept "Conc" column in MasterMix.from_text()

#36 kalekundert closed 3 years ago
0
More sophisticated formatting objects

#35 kalekundert closed 3 years ago
4
Rename Protocol.show() to Protocol.format()

#34 kalekundert closed 3 years ago
0
Easy way to produce pickles from python protocols

#33 kalekundert closed 4 years ago
0
Add config option that specifies where `go` should save files.

#32 kalekundert opened 4 years ago
0
Make `stash pop` hide rather than delete

#31 kalekundert closed 4 years ago
1
Add `stepwise stash replace <id>` command.

#30 kalekundert closed 4 years ago
3
Add "Dependencies" column to `stash`

#29 kalekundert closed 4 years ago
1
Automatically wrap long lines in reaction tables.

#28 kalekundert closed 2 years ago
4
Add `note` command to add footnotes via CLI

#27 kalekundert closed 4 years ago
1
Allow reactions specified by text to not have a solvent.

#26 kalekundert closed 4 years ago
1
Simplify the arguments to load()

#25 kalekundert closed 4 years ago
1