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karissawhiting
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oncokbR
Annotate mutation, copy number alteration and structural variant data in R using oncoKB Annotation API
http://www.karissawhiting.com/oncokbR/
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Get Data Validation Code in a Github Repo (On Enterprise)
#31
karissawhiting
opened
1 month ago
0
Investigate "Unknown" Differences Between Python Results and Package Results
#30
karissawhiting
opened
1 month ago
0
add gnomeverse annotation to readme
#29
stl2137
closed
1 month ago
0
Variant Classifications in MSK IMPACT Not Found In Consequence Map
#28
david-nemirovsky
opened
3 months ago
1
Update package to use httr2
#27
karissawhiting
opened
4 months ago
0
Make utility functions to simplify repeated code
#26
karissawhiting
opened
6 months ago
0
Compare Annotated Results from CDSI, Python Annotator and {oncokbR}
#25
karissawhiting
opened
6 months ago
0
Annotator returns NAs when processing data from CDSI
#24
karissawhiting
opened
8 months ago
0
All examples using annotate_mutations(oncokbR::blca_mutations[1:10, ]) produce error bc missing tumor_type var
#23
hfuchs5
opened
9 months ago
0
Check Intragenic Loss as Fusion Type
#22
karissawhiting
opened
1 year ago
0
Make sure tumor type messaging is clear
#21
karissawhiting
opened
1 year ago
0
Check handling of intragenic fusions
#20
karissawhiting
opened
1 year ago
0
Check integration gnomeR
#19
karissawhiting
closed
11 months ago
0
Unit tests
#18
jflynn264
closed
1 year ago
0
Document annotation output
#17
jflynn264
closed
1 year ago
0
Checks failed, wont run examples
#16
jflynn264
closed
1 year ago
0
variant_classification column not found
#15
JoanneF1229
opened
1 year ago
1
Add unit tests and check functionality & docs of functions
#14
karissawhiting
opened
1 year ago
0
Check results returned with and without tumor type parameter and document differences
#13
karissawhiting
closed
1 year ago
1
Fix mentioned manuscripts
#12
inodb
closed
1 year ago
0
Update Token Authentication
#11
karissawhiting
opened
1 year ago
0
OncoKB Versions
#10
jalavery
closed
1 year ago
4
Questions For cBioPortal
#9
karissawhiting
closed
1 year ago
0
Add sv annotation
#8
karissawhiting
closed
2 years ago
0
Check SV processing
#7
karissawhiting
closed
1 year ago
0
Add tumor type functionality
#6
karissawhiting
closed
1 year ago
1
Make package site
#5
karissawhiting
closed
1 year ago
0
Add github actions
#4
karissawhiting
closed
1 year ago
0
Update df returned by annotate mutations
#3
slb2240
closed
2 years ago
0
Return hugo gene symbol and gene variant in dataframe returned by annotate_mutations()
#2
slb2240
closed
1 year ago
0
Check oncokbR results against oncokb-annotator file annotation
#1
karissawhiting
closed
6 months ago
0