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kbase
/
relation_engine
Repository containing the KBase Relation Engine API, specs, and other related files.
MIT License
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adding script for auto-generating yaml files for ontology loading
#83
zhlu9890
closed
3 years ago
2
add ontology_get_term_by_name query
#82
zhlu9890
closed
3 years ago
2
Bump pyyaml from 5.1.1 to 5.4
#81
dependabot[bot]
closed
3 years ago
0
update ontology_get_associated_samples for update in sample service
#80
zhlu9890
closed
3 years ago
0
update get_associated_samples for changes in sample_ontology_link edge
#79
zhlu9890
closed
3 years ago
0
changing sample_ontology_link required fields
#78
slebras
closed
3 years ago
0
removing deltaloader requirement and changing from and to fields
#77
slebras
closed
3 years ago
0
fixing type information for sample_metadata_term in sample_ontology_link.yaml
#76
slebras
closed
3 years ago
0
removing regexes
#75
slebras
closed
3 years ago
0
returning sample acls info in ontology_get_associated_samples
#74
zhlu9890
closed
3 years ago
0
Default SPEC_RELEASE_PATH overwrites the SPEC_REPO_URL
#73
jayrbolton
opened
3 years ago
0
add sample acls check logic to ontology_get_associated_samples
#72
zhlu9890
closed
3 years ago
0
Add support for taxonomy and ontology data sources to address SCT-2918
#71
eapearson
closed
4 months ago
4
Show update source
#70
jayrbolton
closed
3 years ago
4
Modify triggers and remove dockerdeploy in github workflow file
#69
jayrbolton
opened
3 years ago
7
Additional collections for WITH clause to fix query
#68
jayrbolton
closed
3 years ago
0
add samples acl info retrieval in ontology_get_associated_samples query
#67
zhlu9890
closed
3 years ago
0
Test coverage for untested stored queries
#66
jayrbolton
opened
3 years ago
0
add ontology_get_associated_samples
#65
zhlu9890
closed
3 years ago
3
Update the set-env command to the new version
#64
ialarmedalien
closed
3 years ago
0
Small fixes to DJORNL edge file
#63
ialarmedalien
closed
3 years ago
0
Add errors to DJORNL parser text output
#62
ialarmedalien
closed
3 years ago
0
Adding spec for sample_ontology_link collection in new samples folder.
#61
slebras
closed
3 years ago
1
Implement edge directionality in DJORNL graph
#60
ialarmedalien
closed
3 years ago
1
Add --dry-run command line parameter.
#59
dakotablair
closed
3 years ago
0
Fixed #56: add --dry-run command line parameter.
#58
dakotablair
closed
3 years ago
1
DJORNL parser: `force` option
#57
ialarmedalien
opened
3 years ago
0
DJORNL parser: more `dry_run` options
#56
ialarmedalien
opened
3 years ago
0
DJORNL parser: allow directional edges
#55
ialarmedalien
closed
3 years ago
0
DJORNL edges renamed
#54
ialarmedalien
closed
3 years ago
0
Add specs to release image, and misc cleanup
#53
jayrbolton
closed
3 years ago
0
DJORNL parser: detect more header errors, and do a dry run of parsing
#52
ialarmedalien
closed
4 years ago
0
Update edge types for networks from Jacobson Lab
#51
izaakm
closed
3 years ago
2
DJORNL property name changes
#50
ialarmedalien
closed
4 years ago
0
Add edge_types for networks from Jacobson Lab
#49
izaakm
closed
4 years ago
0
A more sophisticated node merge
#48
ialarmedalien
closed
4 years ago
0
Parser test refactor
#47
ialarmedalien
closed
4 years ago
2
DJORNL: add in a parser check for missing files
#46
ialarmedalien
closed
4 years ago
2
Fix the function that concatenates query parts for the api
#45
jayrbolton
closed
4 years ago
1
query_prefix is broken
#44
jayrbolton
closed
4 years ago
1
Small alteration to results structure
#43
ialarmedalien
closed
4 years ago
6
Remove travis
#42
jayrbolton
closed
4 years ago
1
Fix spec paths
#41
jayrbolton
closed
4 years ago
0
Remove arango auth in wait_for.py
#40
jayrbolton
closed
4 years ago
0
Fix wait for arango
#39
jayrbolton
closed
4 years ago
2
Fix/clean docker build script
#38
jayrbolton
closed
4 years ago
0
Tiny test changes
#37
ialarmedalien
closed
4 years ago
1
Fixing JSON pointer errors
#36
ialarmedalien
closed
4 years ago
0
Add "gene_" or "phenotype_" to keys param for DJORNL queries
#35
ialarmedalien
closed
4 years ago
1
DJORNL parser improvements
#34
ialarmedalien
opened
4 years ago
1
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