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kbseah
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genome-bin-tools
Interactive tools for metagenome visualization and binning in R
GNU General Public License v2.0
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Error in tabulate(taxon) : 'bin' must be numeric or a factor
#37
Anto007
opened
3 years ago
3
Empty scaffolds list & Error: unexpected symbol in "perl fastg_paths_fishing.pl"
#36
michellehauer
closed
3 years ago
0
Coverage-GC plot in R error: 'legend' is of length 0
#35
jade-davies
opened
4 years ago
5
Empty scaffold list files
#34
minna-miha
closed
4 years ago
4
whitespace in contig names
#33
kbseah
opened
5 years ago
0
Installation from Github with `devtools`
#32
kbseah
closed
6 years ago
1
Move accessory scripts to `inst` folder
#31
kbseah
closed
6 years ago
1
Alternative to Log::Message::Simple
#30
kbseah
closed
6 years ago
1
alternative to Amphora2
#29
kbseah
opened
7 years ago
0
Documentation fix
#28
kbseah
closed
6 years ago
1
Add SSU marker overlay to `multiBinPlot`
#27
kbseah
opened
7 years ago
0
Header names sometimes don't match in SPAdes scaffolds.paths vs. scaffolds.fastg
#26
kbseah
closed
7 years ago
0
Add support for Fastg output from other assemblers
#25
kbseah
opened
7 years ago
0
Import CheckM results
#24
kbseah
opened
8 years ago
0
color contig points by parameter
#23
kbseah
opened
8 years ago
0
summary() should report average coverage for a bin
#22
kbseah
closed
8 years ago
2
improve input file checker
#21
kbseah
closed
8 years ago
1
`plot.gbt()` error when `markCutoff=1`
#20
kbseah
closed
8 years ago
1
Implement connection distance `fastgFish()`
#19
kbseah
closed
8 years ago
1
have `winnowMark()` include SSU markers
#18
kbseah
opened
8 years ago
0
implement taxon highlighting as plot parameter
#17
kbseah
closed
8 years ago
1
parse coverage from Fasta headers in SPAdes and Velvet output
#16
kbseah
closed
6 years ago
0
allow highlighting of specific taxa in plots
#15
kbseah
closed
8 years ago
2
make importBins() import as a list of gbtbin objects
#14
kbseah
closed
9 years ago
1
winnowMark() needs marksource parameter
#13
kbseah
closed
9 years ago
1
`fastgFishing()` multiple issues
#12
kbseah
closed
8 years ago
2
Implement user-adjustable scaling parameter for plots
#11
kbseah
closed
8 years ago
1
`get_ssu_for_genome_bin_tools.pl` no longer in sync with phyloFlash database
#10
kbseah
closed
9 years ago
1
gbt() dies if mark= not supplied
#9
kbseah
closed
9 years ago
1
Make `match.call()` append to call history instead of replacing it.
#8
kbseah
closed
9 years ago
1
add new field 'source' to marker annotation table
#7
kbseah
closed
9 years ago
1
document input file formats
#6
kbseah
closed
9 years ago
1
save function calls for bin manipulations
#5
kbseah
closed
9 years ago
1
implement support for contig connectivity from SAM
#4
kbseah
closed
8 years ago
1
terminology fix: LOJ should be LEJ
#3
kbseah
closed
9 years ago
1
temp file names
#2
kbseah
closed
8 years ago
2
EOF character in coverage tables
#1
kbseah
closed
9 years ago
1