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kcleal
/
dysgu
Toolkit for calling structural variants using short or long reads
MIT License
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10
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Dysgy v1.6.4
#95
kcleal
opened
3 days ago
4
merge master
#94
kcleal
closed
5 days ago
0
Issue: Dysgu Module Integration and Empty VCF File Output
#93
poddarharsh15
opened
5 days ago
2
Error with working directories
#92
poddarharsh15
closed
5 days ago
10
using short paired end split reads?
#91
egnst
closed
1 week ago
3
Error installing with conda
#90
jbruxaux
opened
2 months ago
5
Check if input bam file is sorted
#89
JMencius
closed
2 months ago
4
Paired-end reads calling sv
#88
C-YONG
closed
3 months ago
6
v1.6.3
#87
kcleal
closed
3 months ago
0
Process_KILLED
#86
poddarharsh15
closed
3 months ago
7
Parameters for R9 Guppy2, 4, 6
#85
StellariaYuki
closed
3 months ago
4
Long run time
#84
JMencius
closed
4 months ago
13
When merging a large number of samples, the process is very slow
#83
zhongleishi
closed
4 months ago
0
When combining a large number of samples, the speed is very slow
#82
zhongleishi
closed
3 months ago
13
TypeError: an integer is required when using --sites option and manta.vcf
#81
bbunce
closed
3 months ago
6
Subject: Inquiry on Benchmarking DEL and INS Events with dysgu Pipelines.
#80
poddarharsh15
closed
5 months ago
35
_pickle.UnpicklingError: invalid load key, 'A'. Failed to read from standard input: unknown file type
#79
wenyuhaokikika
closed
6 months ago
2
Getting SV length in dysgu output vcf
#78
TizianaS92
closed
6 months ago
3
clarification needed on RG and samples
#77
warthmann
closed
6 months ago
4
problems genotyping, dysgu run --sites
#76
warthmann
closed
6 months ago
3
Fixed multiple "/" in filename when using stdin in main.py
#75
kearseya
closed
8 months ago
0
Update filter_normals.py
#74
kearseya
closed
8 months ago
0
Got an warning when Loading Model in "dysgu run"
#73
LNGDingj
closed
9 months ago
1
When will docker image with new release be available?
#72
LNGDingj
closed
9 months ago
1
v1.6.1
#71
kcleal
closed
9 months ago
0
long reads default mapq lowered to 1: help text for dysgu call still says pacbio and nanopore mode has --mq 20
#70
tbenavi1
closed
9 months ago
1
Dysgu filter IndexError: string index out of range
#69
tbenavi1
closed
9 months ago
6
OverflowError: can't convert negative value to size_t
#68
wenyuhaokikika
closed
10 months ago
2
v1.6.0
#67
kcleal
closed
10 months ago
0
Run OSError: [Errno 24] Too many open files Mac OS M
#66
husamia
closed
10 months ago
4
Generating Alternative Reference
#65
grpiccoli
closed
10 months ago
16
Error with --search option
#64
husamia
closed
10 months ago
11
what is SVLEN？
#63
wenyuhaokikika
closed
10 months ago
2
no command as dysgu filter-normal
#62
GManjiLab
closed
11 months ago
3
GT value for missing data
#61
linsson
closed
1 year ago
4
ValueError: numpy.ufunc size changed, may indicate binary incompatibility. Expected 232 from C header, got 216 from PyObject
#60
zengxi-hada
closed
10 months ago
8
Support for Python 3.11
#59
tbenavi1
closed
1 year ago
2
input bam files refinements
#58
linsson
closed
1 year ago
2
Can dysgu be used in haploid genome?
#57
wushyer
closed
1 year ago
5
Segfault only when using --regions and not --contigs False
#56
moraglewis
closed
1 year ago
6
Merging samples VCFs
#55
mkohailan
closed
1 year ago
8
AttributeError: module 'numpy' has no attribute 'float'
#54
xiekunwhy
closed
1 year ago
2
somatic filter sv script
#53
kearseya
closed
1 year ago
0
About Pacio ccs.bam
#52
ClarenceHsiang
closed
1 year ago
1
Type error: '<' not supported between instances of 'bool' and 'str'
#51
distilledchild
closed
11 months ago
26
RAM Issue - merging large cohorts
#50
lurens
closed
1 year ago
14
Error while trying to clone the repository
#49
mkyriak
closed
1 year ago
2
Bug in re-mapping?
#48
johannesgeibel
closed
1 year ago
2
Merging genotype files
#47
arunvv90
closed
1 year ago
7
Hi,
#46
arunvv90
closed
1 year ago
0
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