kevinrue unisets issues

kevinrue / unisets

Collection of classes to store gene sets.

http://kevinrue.github.io/unisets

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#65 kevinrue closed 4 years ago
0
Drop requirement to R 3.5

#64 kevinrue closed 4 years ago
0
Actions

#63 kevinrue closed 4 years ago
0
Store metadata specific to the type of identifier

#62 kevinrue opened 4 years ago
0
Demonstrate org.*.egPATH for mapping between Entrez Gene and KEGG Pathways

#61 kevinrue opened 4 years ago
0
droplevels()

#60 kevinrue opened 4 years ago
0
subset(..., drop=TRUE|FALSE)

#59 kevinrue opened 4 years ago
0
Backup schematic of class design

#58 kevinrue opened 4 years ago
0
Avoid magick issue

#57 kevinrue closed 4 years ago
0
Handle package data objects and documentation better

#56 kevinrue opened 5 years ago
0
More compact show method. Renamed *Data slots to *Info

#55 kevinrue closed 5 years ago
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Rename elementData and setData to elementInfo and setInfo

#54 kevinrue closed 4 years ago
0
Condense view of elementData and setData

#53 kevinrue closed 5 years ago
0
Type element and set as character in the show method

#52 kevinrue closed 5 years ago
0
roxygenize

#51 kevinrue closed 5 years ago
0
Rename BaseSets to Sets

#50 kevinrue closed 5 years ago
0
Update show method to match the Hits class.

#49 kevinrue closed 5 years ago
0
Fix unit tests for Hits-derived classes

#48 kevinrue closed 5 years ago
0
IndexedRelations

#47 LTLA opened 5 years ago
4
Display GOSets

#46 kevinrue closed 5 years ago
0
Update README.md

#45 kevinrue closed 5 years ago
0
Change show method

#44 kevinrue closed 5 years ago
0
explicitly query entrez ids; add EnsemblIdVector class

#43 kevinrue closed 5 years ago
0
Should `setLengths` return "deduplicated" set lengths?

#42 kevinrue opened 5 years ago
0
Should `duplicated` take into account relation metadata?

#41 kevinrue opened 5 years ago
1
Import

#40 kevinrue closed 5 years ago
0
add `duplicated`, `unique`, and `union` on `BaseSets`.

#39 kevinrue closed 5 years ago
0
subset, duplicated, unique, and union

#38 kevinrue closed 5 years ago
0
subset(..., drop) controls whether to drop empty sets and elements

#37 kevinrue closed 5 years ago
1
Add `c(...)` function

#36 kevinrue closed 5 years ago
1
description of GOSets in vignettes; fixes #34

#35 kevinrue closed 5 years ago
0
vignette needs a section to describe GOSets

#34 kevinrue closed 5 years ago
0
GOHits and GOSets

#33 kevinrue closed 5 years ago
0
"annotation" slot on subclasses of `IdVector`

#32 kevinrue opened 5 years ago
1
add citation info

#31 kevinrue closed 5 years ago
0
Duplicated

#30 kevinrue closed 5 years ago
0
Identify duplicate and extract unique relationships

#29 kevinrue closed 5 years ago
0
docfix

#28 kevinrue closed 5 years ago
0
man page minor fix

#27 robertamezquita closed 5 years ago
1
avoid the use of "examples" in other man pages: issue with pkgdown

#26 kevinrue closed 5 years ago
0
fix authors in vignette.

#25 kevinrue closed 5 years ago
0
Pkgdown

#24 kevinrue closed 5 years ago
0
Replace 'as' by 'import'

#23 kevinrue closed 5 years ago
0
support coercion to BaseSets from list

#22 kevinrue closed 5 years ago
0
import "ids" generic defined in GSEABase

#21 kevinrue closed 5 years ago
0
Refactored man pages

#20 kevinrue closed 5 years ago
0
Ensure unique element and set identifiers

#19 kevinrue closed 5 years ago
0
Support import from GMT files

#18 kevinrue closed 5 years ago
0
Add rownames/set IDs to output of `setData()`

#17 robertamezquita closed 5 years ago
0
`import` from GO annotations rather than `as`

#16 kevinrue closed 5 years ago
0