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kevinrue
/
unisets
Collection of classes to store gene sets.
http://kevinrue.github.io/unisets
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Action
#65
kevinrue
closed
4 years ago
0
Drop requirement to R 3.5
#64
kevinrue
closed
4 years ago
0
Actions
#63
kevinrue
closed
4 years ago
0
Store metadata specific to the type of identifier
#62
kevinrue
opened
4 years ago
0
Demonstrate org.*.egPATH for mapping between Entrez Gene and KEGG Pathways
#61
kevinrue
opened
4 years ago
0
droplevels()
#60
kevinrue
opened
4 years ago
0
subset(..., drop=TRUE|FALSE)
#59
kevinrue
opened
4 years ago
0
Backup schematic of class design
#58
kevinrue
opened
4 years ago
0
Avoid magick issue
#57
kevinrue
closed
4 years ago
0
Handle package data objects and documentation better
#56
kevinrue
opened
5 years ago
0
More compact show method. Renamed *Data slots to *Info
#55
kevinrue
closed
5 years ago
0
Rename elementData and setData to elementInfo and setInfo
#54
kevinrue
closed
4 years ago
0
Condense view of elementData and setData
#53
kevinrue
closed
5 years ago
0
Type element and set as character in the show method
#52
kevinrue
closed
5 years ago
0
roxygenize
#51
kevinrue
closed
5 years ago
0
Rename BaseSets to Sets
#50
kevinrue
closed
5 years ago
0
Update show method to match the Hits class.
#49
kevinrue
closed
5 years ago
0
Fix unit tests for Hits-derived classes
#48
kevinrue
closed
5 years ago
0
IndexedRelations
#47
LTLA
opened
5 years ago
4
Display GOSets
#46
kevinrue
closed
5 years ago
0
Update README.md
#45
kevinrue
closed
5 years ago
0
Change show method
#44
kevinrue
closed
5 years ago
0
explicitly query entrez ids; add EnsemblIdVector class
#43
kevinrue
closed
5 years ago
0
Should `setLengths` return "deduplicated" set lengths?
#42
kevinrue
opened
5 years ago
0
Should `duplicated` take into account relation metadata?
#41
kevinrue
opened
5 years ago
1
Import
#40
kevinrue
closed
5 years ago
0
add `duplicated`, `unique`, and `union` on `BaseSets`.
#39
kevinrue
closed
5 years ago
0
subset, duplicated, unique, and union
#38
kevinrue
closed
5 years ago
0
subset(..., drop) controls whether to drop empty sets and elements
#37
kevinrue
closed
5 years ago
1
Add `c(...)` function
#36
kevinrue
closed
5 years ago
1
description of GOSets in vignettes; fixes #34
#35
kevinrue
closed
5 years ago
0
vignette needs a section to describe GOSets
#34
kevinrue
closed
5 years ago
0
GOHits and GOSets
#33
kevinrue
closed
5 years ago
0
"annotation" slot on subclasses of `IdVector`
#32
kevinrue
opened
5 years ago
1
add citation info
#31
kevinrue
closed
5 years ago
0
Duplicated
#30
kevinrue
closed
5 years ago
0
Identify duplicate and extract unique relationships
#29
kevinrue
closed
5 years ago
0
docfix
#28
kevinrue
closed
5 years ago
0
man page minor fix
#27
robertamezquita
closed
5 years ago
1
avoid the use of "examples" in other man pages: issue with pkgdown
#26
kevinrue
closed
5 years ago
0
fix authors in vignette.
#25
kevinrue
closed
5 years ago
0
Pkgdown
#24
kevinrue
closed
5 years ago
0
Replace 'as' by 'import'
#23
kevinrue
closed
5 years ago
0
support coercion to BaseSets from list
#22
kevinrue
closed
5 years ago
0
import "ids" generic defined in GSEABase
#21
kevinrue
closed
5 years ago
0
Refactored man pages
#20
kevinrue
closed
5 years ago
0
Ensure unique element and set identifiers
#19
kevinrue
closed
5 years ago
0
Support import from GMT files
#18
kevinrue
closed
5 years ago
0
Add rownames/set IDs to output of `setData()`
#17
robertamezquita
closed
5 years ago
0
`import` from GO annotations rather than `as`
#16
kevinrue
closed
5 years ago
0
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