kevinrue velociraptor issues

kevinrue / velociraptor

Toolkit for Single-Cell Velocity

https://kevinrue.github.io/velociraptor/

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issues

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plotVelocityStream() runs indefinitely on macOS (both architectures)

#90 kevinrue opened 1 day ago
0
re-enable plotVelocityStream() with a warning; only test on non-macOS

#89 kevinrue closed 1 day ago
0
Disable plotVelocityStream()

#88 kevinrue closed 2 days ago
0
Attempt to fix #86

#87 kevinrue closed 4 days ago
0
timeouts on BBS

#86 kevinrue closed 4 days ago
7
macos fix for github action: downgrade freetype to install 'ragg' and install binary 'units'

#85 kevinrue closed 1 week ago
1
Fix environment using micromamba for macosx Arm

#84 kevinrue closed 2 weeks ago
0
micromamba environment for macos M1

#83 kevinrue opened 2 weeks ago
0
Fix conda environment using micromamba for windows

#82 kevinrue closed 2 weeks ago
0
Add anaconda to channels for Linux

#81 kevinrue closed 2 weeks ago
0
update scvelo for Windows

#80 kevinrue closed 2 weeks ago
15
Tested on Linux Ubuntu 24.04 x86_64

#79 kevinrue closed 3 weeks ago
0
issue related to pillow?

#78 kevinrue closed 2 weeks ago
7
Top Genes

#77 pshukla63 opened 2 months ago
0
clarify motivation for release 1.15.3

#76 kevinrue opened 2 months ago
0
set version of scvelo triggering the deprecation error to 0.3.1

#75 kevinrue closed 2 months ago
0
Restore previous scvelo environment for Linux

#74 kevinrue closed 2 months ago
0
Document .condarc - channel_priority: strict

#73 kevinrue opened 2 months ago
0
Add environment for macOS (Intel)

#72 kevinrue closed 3 months ago
0
Update scvelo to 0.3.2

#71 kevinrue closed 3 months ago
3
version bump

#70 kevinrue closed 7 months ago
0
Robust fallback mechanism

#69 multimeric closed 7 months ago
8
version bump

#68 kevinrue closed 1 year ago
0
Pin python version

#67 csoneson closed 1 year ago
0
Cannot install velociraptor package on Mac with M1 chip

#66 Cicevk closed 1 year ago
5
Fix segment plot

#65 csoneson closed 1 year ago
0
Bugfix + updated GHA

#64 csoneson closed 1 year ago
0
Some packages don't install through conda

#63 gdagstn closed 3 months ago
18
Error message with scvelo function

#62 zyb1984 closed 2 years ago
1
Don't require velocity assay if only phase plots are generated

#61 csoneson opened 2 years ago
0
Switch zellkonverter::.AnnDataDependencies to zellkonverter::AnnDataD…

#60 csoneson closed 2 years ago
2
Updates to zellkonverter::AnnDataDependencies

#59 lazappi closed 2 years ago
0
Remove column names of reduced dimension representation

#58 csoneson closed 2 years ago
0
add example for scvelo.params argument

#57 kevinrue closed 2 years ago
0
add example for scvelo.params argument

#56 ATpoint closed 2 years ago
10
path to update matplotlib

#55 YOU-k closed 2 years ago
3
Add typing extensions

#54 csoneson closed 2 years ago
0
`subset.row` not working

#53 fzhang12 opened 2 years ago
0
plotVelocity function does not exist

#52 andrewjkwok closed 2 years ago
5
is there a function to identify important genes in velociraptor?

#51 zh-zhang1984 closed 3 years ago
2
TypeError: object of type 'NoneType' has no len()

#50 zh-zhang1984 closed 3 years ago
6
scvelo() ImportError: /lib64/libstdc++.so.6: version `GLIBCXX_3.4.21' not found (required by /home/shijian/.cache/basilisk/1.2.1/velociraptor-1.0.0/env/lib/python3.7/site-packages/pandas/_libs/window/aggregations.cpython-37m-x86_64-linux-gnu.so)

#49 shijianasdf opened 3 years ago
4
Update github action

#48 kevinrue closed 3 years ago
0
scVelo() Error in installConda() : conda installation failed with status code '1'

#47 shijianasdf opened 3 years ago
3
Error in py_module_import(module, convert = convert)

#46 frenkiboy opened 3 years ago
5
Move sanity check vignette to inst/

#45 kevinrue closed 3 years ago
0
Disable Pkgdown and docker to cache packages on successful run

#44 kevinrue closed 3 years ago
0
Build and deploy Docker image from GitHub Actions to DockerHub

#43 kevinrue closed 3 years ago
1
Use biocthis template for GitHub Actions

#42 kevinrue closed 3 years ago
0
Add Michael Stadler to package authors

#41 kevinrue closed 3 years ago
1