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kgori
/
sigfit
Flexible Bayesian inference of mutational signatures
GNU General Public License v3.0
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Incorrect labels in code documentation of human_trinuc_freqs
#69
gevro
closed
1 year ago
1
Trinucleotide context names for plot_spectrum
#68
fanghu-hku
closed
1 year ago
5
divergent transitions after warmup
#67
ab08028
closed
1 year ago
1
Signature fitting for non-human data
#66
kw10
closed
1 year ago
5
Similar signatures - inconsistent extraction
#65
gevro
closed
2 years ago
4
fit_signatures and genomes-indepedent cosmic reference
#64
gevro
closed
1 year ago
3
Bug in build_catalogues
#63
gevro
closed
2 years ago
2
sigfit.rdb' is corrupt
#62
gevro
closed
2 years ago
1
install sigfit: Pandoc is required to build R Markdown vignettes but not available.
#61
jingydz
closed
2 years ago
1
Parallelization of fit_signatures
#60
jasonptm
closed
2 years ago
1
get_loglik
#59
ab08028
opened
2 years ago
3
Fitting Samples Across Multiple Genomes
#58
jasonptm
closed
2 years ago
2
Installation error
#57
gevro
closed
3 years ago
8
Preparing mutational opportunities matrix?
#56
kmegq
closed
2 years ago
3
Vignette builder patch
#55
kgori
closed
3 years ago
0
Error running second vignette
#54
kmegq
closed
3 years ago
3
Data set 'cosmic_signatures_v3' not found
#53
kmegq
closed
3 years ago
4
Questions related to the model design and inference method in sigfit-NMF
#52
WuyangFF95
closed
2 years ago
2
Dev
#51
baezortega
closed
4 years ago
1
Can't find vignette
#50
Dagsbio
closed
4 years ago
7
Paper
#49
baezortega
closed
4 years ago
0
get reconstructed mutation catalogues
#48
MariaCartolano
closed
4 years ago
1
Fail to install sigfit in Anaconda enviroment on CentOS 7
#47
WuyangFF95
closed
5 years ago
6
Installation problem in MacOS
#46
mishugeb
closed
5 years ago
3
Enhancements for v2.0
#45
baezortega
closed
4 years ago
0
Refitting after signature selection
#44
arpoe
closed
4 years ago
1
Install problem in window sysmtem
#43
Shicheng-Guo
closed
5 years ago
2
Version 1.3.1 with TravisCI and minor fixes
#42
baezortega
closed
5 years ago
0
Fix travis
#41
baezortega
closed
5 years ago
0
Merging dev for v1.3.0
#40
baezortega
closed
5 years ago
0
`multiplier` prior in EMu model
#39
baezortega
closed
5 years ago
2
build_catalogues fails if a sample only has one row in a variants table
#38
kgori
closed
5 years ago
1
Fix issue 36: Update Makevars to require C++11
#37
kgori
closed
5 years ago
0
C++11 required for latest StanHeaders (2.18)
#36
kgori
closed
5 years ago
1
Enhancements for v1.3.0
#35
baezortega
closed
5 years ago
0
Format mutation counts in plots
#34
baezortega
closed
5 years ago
1
Remove integer counts restriction
#33
baezortega
closed
5 years ago
1
Dev
#32
baezortega
closed
6 years ago
1
citation
#31
arpoe
closed
5 years ago
2
Fixes and improvements for v1.2.0
#30
baezortega
closed
6 years ago
1
Dev
#29
baezortega
closed
6 years ago
7
build_catalogues uses character matrix, not data frame
#28
dg13
closed
6 years ago
4
Other out of date code in vignette
#27
dg13
closed
6 years ago
1
Out of date code in vignette
#26
dg13
closed
6 years ago
8
Attach input data to output stanfit
#25
baezortega
closed
6 years ago
1
Multi-level model for different tissue types
#24
kgori
opened
6 years ago
0
Implement optional multi-chain extraction
#23
baezortega
closed
5 years ago
3
Add functionality to get variant triplet context from a list of variant positions and the ref sequence
#22
kgori
opened
7 years ago
2
Exposures are mislabelled in plot_reconstruction
#21
kgori
closed
7 years ago
2
Address model selection for multiple extraction
#20
baezortega
closed
7 years ago
3
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