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kgori
/
treeCl
Clustering phylogenetic trees with python
MIT License
25
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Loading pre-computed trees
#27
SashaNikolaevaBerkeley
closed
1 year ago
4
feature request: support for IQTree
#26
alexweisberg
opened
3 years ago
0
TreeDistance classes missing "name" attribute
#25
lthiberiol
opened
3 years ago
1
Drop support for python versions that are past end-of-life
#24
kgori
closed
3 years ago
0
scikit bio and python >=3.7 are in conflict
#23
kgori
closed
3 years ago
1
Pandas dropped support for python 3.4
#22
kgori
closed
3 years ago
1
Bio.Alphabet removed from biopython
#21
kgori
closed
3 years ago
1
Spectral clustering is inconsistent
#20
alexweisberg
closed
5 years ago
3
treeCl error with scikit-learn >= 0.20.0
#19
robinengler
closed
5 years ago
3
Simple Questions
#18
fbemm
closed
6 years ago
1
scaling inter-tree distance calculations to 3000+ gene trees
#17
rohanmaddamsetti
closed
5 years ago
7
Working with get_inter_tree_distances()
#16
fbemm
closed
6 years ago
5
rnni method of tree class throws error
#15
eik-dahms
closed
6 years ago
5
fast raxml searches produce an error
#14
osuchanglab
closed
5 years ago
2
unexpected keyword argument
#13
jlblancopastor
opened
7 years ago
5
Creating new datasets with permutations
#12
jlblancopastor
opened
7 years ago
2
No match found for "Final GAMMA likelihood
#11
fanliang123
closed
7 years ago
3
AssertionError from Spectral c'tor
#10
hdetering
closed
6 years ago
4
gene tree calculation stops after some time
#9
dvdylus
closed
7 years ago
1
Running TreeCl with pre-computed trees
#8
mossmatters
closed
6 years ago
2
scikit-bio no longer works with python 2
#7
vcorby
closed
8 years ago
2
Can't import treeCl after installation
#6
davidemms
closed
6 years ago
0
Multiprocessing bug - Queue.get fails due to EINTR
#5
kgori
closed
8 years ago
0
Installation problem
#4
davidemms
closed
8 years ago
7
File handling in `calc_trees`
#3
szitenberg
closed
8 years ago
4
Collection is undefined
#2
williamhuntpalmer
closed
8 years ago
2
bootstrap, seqconvert & treeCl bin load issues
#1
smoretti
closed
9 years ago
5