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khabbazian
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l1ou
Detection of evolutionary shifts in Ornstein-Uhlenbeck models
GNU General Public License v2.0
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Empty profile when using multiple cores
#54
rmarquezp
opened
10 months ago
1
error related with R version
#53
nhazzi
opened
1 year ago
2
plot.l1ou: improve documentation about the trait rescaling
#52
cecileane
closed
2 years ago
1
fix #50: to make Y of matrix class
#51
cecileane
closed
2 years ago
1
Error in running estimate_shift_configuration - the condition has length > 1
#50
niming2
closed
2 years ago
9
issue with candidate edges
#49
jakeberv
closed
2 years ago
1
measurement error
#48
jakeberv
opened
2 years ago
2
Updated is.binary.tree to is.binary
#47
Keffy
closed
2 years ago
4
matrix class warning
#46
miltontan
closed
2 years ago
2
Fit Brownian motion
#45
oscarIM
closed
4 years ago
3
estimate_shift_configuration error
#44
oscarIM
closed
4 years ago
0
Error in starting.value$alpha : $ operator is invalid for atomic vectors
#43
Gonzobilbao
closed
4 years ago
1
CPU overuse
#42
kfuku52
closed
4 years ago
1
install genlasso
#41
josephwb
closed
5 years ago
2
problem when runing estimate_convergent_regimes with pBIC option
#40
Gonzobilbao
closed
4 years ago
1
Error: object 'elist.min' not found when estimating convergent regimes using "pBIC" and "pBICess"
#39
Gonzobilbao
closed
4 years ago
2
github installation issues
#38
cecileane
closed
5 years ago
8
manual unavailable
#37
cecileane
closed
6 years ago
3
Error with argument alpha.upper=0
#36
jjsolano
closed
4 years ago
4
better installation instructions
#35
cecileane
closed
6 years ago
0
3.4.2 compilation error
#34
willgearty
closed
6 years ago
4
Installation of l1ou
#33
ghost
closed
6 years ago
8
estimate_convergent_regimes error
#32
grahamjslater
closed
7 years ago
3
small bug fixes:
#31
cecileane
closed
7 years ago
2
Error in solve.default(comp$XX): system is computationally singular
#30
kfuku52
closed
7 years ago
11
Error of phylolm_CR in convergence estimation
#29
kfuku52
closed
7 years ago
4
in estimate_shift_configuration: error in if (zmin < gamhat)
#28
cecileane
closed
4 years ago
2
added missing option "quietly" for fit_OU
#27
cecileane
closed
7 years ago
0
Error in select_best_solution(tree, Y, sol, opt = opt)
#26
kfuku52
closed
7 years ago
12
readme.md: version note update
#25
cecileane
closed
7 years ago
0
Remove normalize-tree height option
#24
yuqing19118
closed
7 years ago
9
Remove normalize_tree function
#23
yuqing19118
closed
7 years ago
1
Add normalize tree back into sqrt_ou_covariance
#22
yuqing19118
closed
7 years ago
0
Hello Mohammad, I have removed normalized tree from 2 R files and checks the package works fine
#21
yuqing19118
closed
7 years ago
1
an error when nShifts == 0
#20
kfuku52
closed
7 years ago
6
Efficient way to calculate treeheight for covariance matrix
#19
yuqing19118
closed
7 years ago
0
special case alpha=0
#18
yuqing19118
closed
7 years ago
0
COV_matrix divided by 2alpha
#17
yuqing19118
closed
7 years ago
0
Little error in the same of sqrt_OU_covariance
#16
yuqing19118
closed
7 years ago
0
I have made more changes for shift.means and I have added some examples in the documentation.
#15
yuqing19118
closed
7 years ago
5
Pull the latest changes from l1ou
#14
yuqing19118
closed
7 years ago
3
bug fix, efficiencies in fit _OU_model, doc in estimat_convergent_regimes
#13
cecileane
closed
8 years ago
1
criterion arg in estimate_convergent_regimes
#12
eliotmiller
closed
8 years ago
3
error fix in get_shift_configuration, tools.R
#11
cecileane
closed
8 years ago
0
updates in doc and in progress report
#10
cecileane
closed
8 years ago
0
Error message in adjust_tree()
#9
eliotmiller
closed
8 years ago
10
updates to get log-likelihood info
#8
cecileane
closed
8 years ago
0
small changes
#7
cecileane
closed
8 years ago
0
minor changes and minor suggestion
#6
cecileane
closed
8 years ago
0
small update, and question
#5
cecileane
closed
8 years ago
1
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