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kharchenkolab
/
Baysor
Bayesian Segmentation of Spatial Transcriptomics Data
https://kharchenkolab.github.io/Baysor/
MIT License
152
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Error with docker version v0.6.2
#90
andynkili
opened
1 year ago
0
Container installation / singularity image
#89
sebgoti
opened
1 year ago
1
Memory usage with huge datasets
#87
maximilian-heeg
opened
1 year ago
6
LoadError: pca must have at least 3 components
#86
ankitbioinfo
opened
1 year ago
1
Get stuck on 'Estimating local colors', memory use increases and freeze
#85
HaojiaWu
closed
1 year ago
2
Baysor run stuck after 2D coordinates
#84
markutz556
closed
1 year ago
4
Baysor crashes with OutOfMemoryError() when prior segmentation column contains large integers
#83
pakiessling
closed
1 year ago
2
ERROR: MethodError: no method matching boundary_polygons_from_grid(::Matrix{UInt32}; grid_step::Float64)
#82
sarahyk
closed
1 year ago
8
How to deal with unassigned transcripts from prior segmentation
#81
jwrth
closed
1 year ago
1
ERROR: ArgumentError: Package CSVFiles
#80
Dana162001
closed
3 weeks ago
3
Error: MethodError(Matrix{<:Unsigned}
#79
ccbvib
closed
3 weeks ago
3
SparseArray recursion issue with baysor preview
#78
bhhlee
closed
1 year ago
4
Error with v0.6.1
#77
ilyakorsunsky
closed
1 year ago
1
Error when providing prior segmentation mask
#75
sebgoti
closed
1 year ago
2
Error: DomainError(NaN, "Normal: the condition σ >= zero(σ) is not satisfied.")
#74
ccbvib
closed
1 year ago
2
nuclei -> "nuclei"
#73
DyScLyHa
closed
1 year ago
1
Fix issue loading prior segmentation from csv column.
#72
dcjones
closed
1 year ago
2
Error while running with prior segmentation mask and personalized config file
#71
Hannah-Doerpholz
closed
1 year ago
3
adding Baysor segmentation polygons into MERSCOPE visualizer
#70
munizmom
closed
1 year ago
2
Issue with ubuntu version 0.6.0 — 2023-04-20
#69
nhuhoa
closed
1 year ago
2
Error: InexactError(:trunc, UInt16, 65537) while estimating boundary
#66
teng-gao
closed
1 year ago
1
Error when building CLI from source: GitError(Code:ERROR, Class:SSL, failed to load CA certificates: 0xffffde80 - X509 - The CRT/CRL/CSR format is invalid, e.g. different type expected)
#65
leonardosepulveda
closed
1 year ago
1
Error when running Baysor downloaded binary
#64
teng-gao
closed
1 year ago
1
ErrorException "Artifact "Arpack" was not installed correctly
#63
ccbvib
closed
1 year ago
2
TypeError during Building gene structure plot
#62
james-cranley
closed
1 year ago
2
Can not finish whole process.
#61
IMJoeyZhu
closed
1 year ago
1
Error running with --save-polygons=geojson
#60
fpestana-git
closed
1 year ago
2
Plot step crashes
#59
mfiers
closed
1 year ago
3
Runs get Killed
#58
mfiers
closed
1 year ago
2
Error on preview: Unsupported mime
#57
quentinblampey
closed
1 year ago
5
Installation issue
#56
CristiSoitu
closed
1 year ago
7
Using Known Cell Types from scRNA seq data?
#55
arunchakra
closed
1 year ago
1
Parameter question
#54
Huimin721
closed
1 year ago
2
Issues on execute baysor:latest in docker.
#53
SeokJinYeo
closed
1 year ago
1
"column name :gene not found in the data frame"
#52
ruqianl
closed
2 years ago
2
why I always got stopped at this step
#51
Yingzzzzz
closed
1 year ago
1
Build CLI from source error
#50
pvtodorov
closed
1 year ago
5
No output when using 'color=:ncv_color' in plot_molecules
#49
sebgoti
closed
1 year ago
3
Same issue as #18 though I have the -p option
#48
sebgoti
closed
1 year ago
4
Updated Binary for Linux
#47
arunchakra
closed
1 year ago
7
Installation Issue
#46
BoomStarcuc
closed
1 year ago
6
Adjusting covariance
#45
ilyakorsunsky
closed
2 years ago
2
How to change color in plot_molecules
#44
zhanglab2008
closed
1 year ago
1
Fix: InexactError
#43
maximilian-heeg
closed
2 years ago
1
Write ncvs to a file
#42
RoopaMadhu
closed
2 years ago
1
Inconsistent cell number in the json file and cell stats file
#41
zhanglab2008
closed
1 year ago
5
A question about cell clustering
#40
rocketeer1998
closed
1 year ago
1
A question about prior segmentation
#39
rocketeer1998
closed
1 year ago
3
Any idea about projecting cell type labels back to cell segmentation plot?
#38
rocketeer1998
closed
2 years ago
4
Error when estimating boundaries
#37
kleejin
closed
1 year ago
3
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