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kharchenkolab
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cacoa
Single-cell Case Control Analysis
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update seurat5 count matrix access
#53
chilampoon
opened
7 months ago
1
plotSampleDistances with metadata gives error
#52
Laura19993
opened
7 months ago
3
estimateMetadataSeparation gives error
#51
Laura19993
opened
7 months ago
4
`estimateMetadataSeparation` with `space = "pseudo.bulk"` returns error
#50
rrydbirk
opened
7 months ago
0
Error calling `estimateExpressionShiftMagnitudes` function with Seurat object
#49
mkazanov
opened
9 months ago
2
Cacoa not working with Seurat object
#48
adityamahadevaniyer
closed
12 months ago
2
estimateMetadataSeparation() gave an error - "object 'n.permutations' not found"
#47
Angel-Wei
closed
1 year ago
5
invalid character indexing when running estimateClusterFreeDE
#46
amissarova
closed
7 months ago
2
plotOntologyHeatmapCollapsed function got an error
#45
Angel-Wei
closed
1 year ago
9
CoDA cleanup
#44
rrydbirk
closed
1 year ago
0
estimateCellLoadings fails when less than 3 cell types
#43
rrydbirk
closed
1 year ago
1
Bug fixes
#42
rrydbirk
closed
1 year ago
0
Installation errors
#41
daniel-spies
opened
1 year ago
1
Updated documentation
#40
evanbiederstedt
closed
1 year ago
8
unable to use Cacoa on a seurat object
#39
GhobrialMoheb
closed
1 year ago
7
estimateCellLoadings() fails: object 'mx.first' not found
#38
rrydbirk
closed
1 year ago
1
estimateClusterFreeExpressionShifts() produces all NaN
#37
rrydbirk
closed
7 months ago
3
Warning in plotClusterFreeExpressionShifts()
#36
rrydbirk
closed
1 year ago
1
Warning in estimateClusterFreeExpressionShifts()
#35
rrydbirk
closed
1 year ago
1
Move checkPackageInstalled to sccore
#34
rrydbirk
closed
1 year ago
1
Error: dimension should be positive
#33
cubense
closed
2 years ago
2
cao$plotOntology() filtering by "up" and "down"dos not work
#32
Laura19993
closed
1 year ago
2
Encounted an Error in if (maxP > -minP) { : missing value where TRUE/FALSE needed
#31
ZeroKeng
closed
2 years ago
4
estimateClusterFreeDE returns only NaNs and 0s (seurat object)
#30
amissarova
closed
2 years ago
3
ClusterFreeExpression Not S4 object
#29
jayp2919
opened
2 years ago
3
fails when sample.groups describes a subset of samples
#28
pkharchenko
opened
2 years ago
0
Add a vignette explaining parameters for all analyses
#27
VPetukhov
opened
2 years ago
0
estimateDiffCellDensity() drops negative values
#26
rrydbirk
closed
2 years ago
3
Passing `data.object=NULL` makes passing `embedding` mandatory
#25
VPetukhov
closed
2 years ago
1
Understanding resampling parameters for DEG analysis
#24
Laura19993
closed
2 years ago
5
clean up for CRAN
#23
evanbiederstedt
closed
2 years ago
3
Troubles with estimateExpressionShiftMagnitudes()
#22
JarningGau
closed
2 years ago
2
Troubles with estimateExpressionShiftMagnitudes() and estimateDiffCellDensity() functions
#21
anastasiiaNG
opened
2 years ago
10
Basic roxygen2 docs
#20
evanbiederstedt
closed
2 years ago
1
Possible wrong contour for overlapping
#19
hiraksarkar
closed
2 years ago
4
palette argument in plotSampleDistances works only for discrete covariates
#18
VPetukhov
closed
2 years ago
1
Updated cluster-based expression shifts
#17
VPetukhov
closed
3 years ago
0
no dependency on psych package declared
#16
pkharchenko
closed
3 years ago
4
Roxygen2 documentation
#15
evanbiederstedt
closed
2 years ago
0
Ontology cleanup
#14
rrydbirk
closed
3 years ago
0
sample.groups are not extracted automatically anymore
#13
rrydbirk
closed
2 years ago
1
Cell density
#12
VPetukhov
closed
3 years ago
0
object 'cda' not found in getCdaLoadings
#11
VPetukhov
closed
3 years ago
2
estimateExpressionShiftMagnitudes uses all available cores
#10
rrydbirk
closed
3 years ago
1
Improve localZScores calculation
#9
rrydbirk
closed
4 years ago
3
Unused argument
#8
rrydbirk
closed
4 years ago
6
Incorporate DE estimations
#7
rrydbirk
closed
4 years ago
2
estimateExpressionShiftMagnitudes uses all available memory
#6
rrydbirk
closed
4 years ago
3
Updated factors and documentation
#5
rrydbirk
closed
4 years ago
1
Notch error in plotExpressionShiftMagnitudes
#4
rrydbirk
closed
4 years ago
1
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