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kingsfordgroup
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sailfish
Rapid Mapping-based Isoform Quantification from RNA-Seq Reads
http://www.cs.cmu.edu/~ckingsf/software/sailfish
GNU General Public License v3.0
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Library bulk download - Port 80 is Blocked
#70
carlitre
closed
9 years ago
1
salmon 0.2.7 does not compile with boost 1.57.0
#69
sjackman
closed
9 years ago
9
wrong path for bwa compilation
#68
noncodo
closed
9 years ago
7
typo
#67
mmendez12
closed
9 years ago
1
Fix concurrency bug that can skip some alignments in alignment-based salmon.
#66
rob-p
closed
9 years ago
0
make formatting of salmon cmdline arguments consistent
#65
blahah
closed
9 years ago
1
Banish Shark from the list of dependencies
#64
rob-p
closed
9 years ago
1
Eliminate shared library dependencies in salmon
#63
rob-p
closed
8 years ago
2
Unhelpful error message
#62
cboursnell
closed
9 years ago
3
Salmon 0.2.3 release binary GLIBC issue
#61
billytcl
closed
9 years ago
3
Compile error for libshark
#60
djhshih
closed
9 years ago
3
Precompiled SalmonBeta-v0.2.2_ubuntu-14.04 seg faults upon invocation
#59
djhshih
closed
9 years ago
3
mapped ratio for salmon
#58
runxuan
closed
9 years ago
2
Sailfish quant crashes on example data (Vagrant - Ubuntu 14.04)
#57
pfaucon
closed
9 years ago
4
Doker image for salmon?
#56
rob-p
closed
8 years ago
5
Increased requirements
#55
cboursnell
closed
9 years ago
11
Can't write postSample.bam
#54
cboursnell
closed
9 years ago
2
Encore for salmon install issue!
#53
cganote
closed
9 years ago
4
Fix some warning messages
#52
jpiper
closed
9 years ago
0
Installation issues
#51
cganote
closed
9 years ago
7
Fix usage example in help message
#50
jpiper
closed
9 years ago
1
Fix bad link to RTD on README (fastio branch)
#49
standage
closed
9 years ago
1
fatal signal: SIGSEGV(11) while creating index
#48
SanderClaus
closed
9 years ago
3
Passthrough unaligned reads
#47
cboursnell
closed
9 years ago
5
Time to compute hash function
#46
aconz2
closed
9 years ago
3
ERROR: sailfish count invoked improperly?
#45
mdapas
closed
9 years ago
2
Indexing Step
#44
rpadmanabhan
closed
9 years ago
2
Add missing comma to acceptableExtensions list.
#43
lweasel
closed
10 years ago
1
Could not resolve upgrade information in the alotted time.
#42
yuanyongxian
closed
10 years ago
2
[salmon] improve clarity of help messages
#41
blahah
closed
9 years ago
2
[salmon] document new lib string format
#40
blahah
closed
10 years ago
2
formatting in help msg
#39
blahah
closed
10 years ago
0
typo in --alignments arg capture
#38
blahah
closed
10 years ago
0
Salmon beta
#37
blahah
closed
10 years ago
3
Expression estimation of similar transcript variants of the same gene
#36
Biotechnologe
closed
9 years ago
1
salmon installation
#35
mradovic
closed
10 years ago
11
0.6.3 SIGFPE - no transcripts quantified
#34
olgabot
closed
9 years ago
1
Low number of reads counted
#33
myojencards
closed
9 years ago
2
Sailfish 0.6.3 linux binary: LD_LIBRARY_PATH setting conflicts python setting in ubuntu 14.04 64-bit
#32
yingchen69
closed
10 years ago
1
link to boost in readme is broken
#31
stephens999
closed
9 years ago
1
Sailfish Install not working.
#30
RGunning
closed
10 years ago
7
Indexing never ends
#29
delafont
closed
8 years ago
1
quant strand specific RNA seq recognized as "unstranded"
#28
bioinforME
closed
9 years ago
2
cleanup of orientation string
#27
dakl
closed
9 years ago
1
Sailfish v0.6.3 cannot use oriented reads and there's no "-l" option
#26
GaelPAlamancos
closed
10 years ago
4
sailfish quant crashes
#25
ttriche
closed
9 years ago
2
Check for upgrades manually at www.cs.cmu.edu/~ckingsf/sailfish
#24
ttriche
closed
9 years ago
1
jellyfish hpp files and HeptamerIndex.cpp
#23
sewen67
closed
9 years ago
1
Argument Checking for Output Stem
#22
DarioS
closed
9 years ago
1
Segmentation Fault for RefSeq Genes
#21
DarioS
opened
10 years ago
4
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