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knausb
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vcfR
Tools to work with variant call format files
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plans for helper functions?
#114
romunov
opened
6 years ago
3
Can't read GQ values from a freebayes VCF
#113
mthon
closed
6 years ago
2
Keep only the highest AF and its information from Ion Torrent data
#112
Tato14
closed
6 years ago
4
Error in .vcf_stats_gz
#111
igordot
closed
5 years ago
27
No file access, closes #109
#110
NikNakk
closed
6 years ago
2
read.vcfR fails on offline files on Windows
#109
NikNakk
closed
6 years ago
3
vcfR2DNAbin with haploid data returns NaN
#108
knausb
closed
6 years ago
2
Read specific region of VCF
#107
kdm9
opened
6 years ago
14
adegenet::df2genind check.ploidy
#106
knausb
closed
6 years ago
7
is.indel function
#105
fdchevalier
closed
6 years ago
4
edit ID value of *.vcf file
#104
ProzacR
closed
6 years ago
4
proc.chromR Error
#103
drmaly
closed
6 years ago
9
select variants according to variant ID or CHROM in R
#102
afontcub
closed
6 years ago
2
Add documentation for stats calculated by gt2popsum/gt.to.popsum
#101
zkamvar
closed
6 years ago
3
Error when try to read a vcf.gz file into vcfR?
#100
Tman3
closed
6 years ago
8
read.vcfR RStudio crash
#99
mxrcx
closed
6 years ago
4
Warnings in vcfR's C++ code at CRAN
#98
knausb
closed
6 years ago
12
empty VCF: 'data' must be of a vector type, was 'NULL'
#97
igordot
closed
6 years ago
3
read.vcfR caught segfault
#96
igordot
closed
6 years ago
6
vcfR2tidy: Columns must have unique names
#95
igordot
closed
6 years ago
9
added documentation vcfR2migrate
#94
shankarkshakya
closed
6 years ago
3
VCFR2migrate
#93
shankarkshakya
closed
6 years ago
2
vcfR2genlight big data
#92
JimWhiting91
opened
6 years ago
5
cbind in vcfr2tidy insensitive to duplicate column names
#91
ripkrizbi
closed
6 years ago
5
vcf_field_names incorrectly parses fields that contain comma in quoted strings
#90
ripkrizbi
closed
6 years ago
17
fix url import
#89
zkamvar
closed
6 years ago
3
read.vcfR doesn't work with network locations
#88
V-Z
closed
6 years ago
11
Tiny fix to parse INFO fields with "=" in their values.
#87
eriqande
closed
6 years ago
5
read.vcfR crash
#86
2waybene
closed
6 years ago
4
write.vcf tilde expansion
#85
Neato-Nick
closed
7 years ago
1
Neucleotide frequency analysis
#84
psddia
closed
6 years ago
2
how to load my.vcf.gz file into vcfR?
#83
psddia
closed
7 years ago
5
Confusing description of "consensus" option in vcfR2DNAbin()
#82
V-Z
closed
7 years ago
2
vcfR2DNAbin does not consider '*' as a valid character
#81
nikitagambhir
closed
6 years ago
17
issue reading vcf generated by lofreq
#80
k-florek
closed
7 years ago
6
*** caught segfault ***
#79
mmahmoudian
closed
7 years ago
5
extract_gt_tidy dumps messages without the option to control them
#78
ripkrizbi
closed
7 years ago
5
no slot of name "group"
#77
ale07alvarez
closed
7 years ago
2
Compact shared libraries
#76
knausb
opened
7 years ago
0
Undefined symbol error at compilation
#75
knausb
closed
7 years ago
6
"Ranking data" : Error in rank.variants.chromR(chrom, scores) : index out of bounds
#74
JustGitting
closed
7 years ago
20
Correcting number of individuals and removed length of loci from H format data
#73
shankarkshakya
closed
7 years ago
1
vcfR2migrate reports 2* sample
#72
knausb
closed
7 years ago
1
migrate-n format data
#71
shankarkshakya
closed
7 years ago
2
vcf_stats_gz should not scan entire file when entire file is not desired
#70
knausb
closed
7 years ago
3
Modified read.vcfR so that when nrow=0, it's much faster
#69
rcorty
closed
7 years ago
8
Can't load vcf file
#68
zillurbmb51
closed
7 years ago
20
Site frequency spectrum
#67
knausb
opened
7 years ago
0
Pairwise gen diff
#66
Tabima
closed
7 years ago
2
SAN error in v1.5.0
#65
knausb
closed
7 years ago
2
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