knausb vcfR issues - Githubissues

knausb / vcfR

Tools to work with variant call format files

248 stars 54 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

Addresses issue CHROM param in create.chromR #52

#164 RichardJActon opened 4 years ago
1
Impending CRAN retirement?

#163 katiesaund closed 4 years ago
3
vcfR2tidy() gives me an error: Can't combine `..1$tt` <logical> and `..2$tt` <character>.

#162 sridharsh closed 4 years ago
5
fix #160

#161 jan-glx closed 4 years ago
6
installation of master fails for missing checkbashisms

#160 jan-glx closed 4 years ago
7
vcfR2tidy error (Can't combine `..1$tt` <logical> and `..2$tt` <character>.)

#159 fpsom closed 4 years ago
3
vcfR2genlight failed to convert polyploid of mixed ploidy vcf (obtained by GATK)

#158 lihe-s opened 4 years ago
6
dplyr 1.0.0 fixes

#157 hadley closed 4 years ago
2
Compilation failed for package ‘vcfR’

#156 FannyPouyet closed 4 years ago
3
issue with as.matrix for subsetting FASTA file to 1 chromosome?

#155 lesneski closed 4 years ago
7
dplyr 1.0.0

#154 knausb closed 4 years ago
1
VCF files written by `vcfR::write.vcf` not parsed correctly by `bcftools`

#153 OJWatson closed 4 years ago
4
Parsing GLnexus pVCF

#152 ghost closed 4 years ago
10
Easy way to extract field for plotting?

#151 ghost closed 4 years ago
2
class == matrix

#150 knausb closed 4 years ago
4
Update conversion documentation

#149 zkamvar closed 4 years ago
5
can I use masker on INFO field values?

#148 splaisan closed 4 years ago
3
Segfault - memory not mapped

#147 tirohia closed 4 years ago
3
Unable to read VCF data

#146 oalavijeh closed 5 years ago
3
changing chromosome ID into numeric or integer

#145 treebreeder closed 5 years ago
2
Missing license version

#144 jenzopr closed 5 years ago
2
Support for bcf files

#143 explodecomputer closed 5 years ago
2
is.biallelic not working the way you would expect it

#142 ckastall closed 5 years ago
2
blank row crashes R - read.vcfR()

#141 TomJamesW opened 5 years ago
4
Improving run time performance

#140 arumds opened 5 years ago
3
Error in .shlib_internal(args) : C++11 standard requested but CXX11 is not defined

#139 tedtoal closed 5 years ago
9
The following INFO field appears more than once

#138 tedtoal closed 5 years ago
2
read.vcfR aborts RStudio/catches segfault in R

#137 SMartinOSU closed 5 years ago
3
Create Multisample VCF File

#136 canholyavkin closed 5 years ago
3
create.chrom() produces an empty object

#135 jrhb closed 5 years ago
3
Can't use a logical vector to subset a vcf when using write.vcf()

#134 jsstanley closed 5 years ago
2
R aborted after loading vcf file

#133 majeedjamakhani closed 5 years ago
4
Parse CSQ entitities into individual columns

#132 audyavar opened 5 years ago
4
Missing data not recognized when GT is null but contains more info

#131 Neato-Nick closed 5 years ago
2
INFO2df cuts strings with "=" sign

#130 thedam closed 5 years ago
5
numeric sample names in read.vcfR

#129 jessepoland closed 5 years ago
3
vcfR2genlight() - variation in ploidy determination

#128 fdchevalier opened 5 years ago
5
vcfR2DNAbin() - no sequence label whith DNAbin list type

#127 fdchevalier opened 5 years ago
0
vcfR reading problem

#126 OmidJa closed 5 years ago
3
Support Tabix

#125 romanzenka opened 5 years ago
9
VCF files should be block-gzipped and not gzipped

#124 jasper1918 opened 5 years ago
4
Don't install vcfR in Rstudio make: *** [gt_to_popsum.o] Error 1

#123 zhenghy closed 5 years ago
1
vcfR2DNAbin() - problem with DNAbin list type

#122 fdchevalier opened 5 years ago
2
extract.haps() does not handle all missing data

#121 fdchevalier opened 5 years ago
1
documentation: parameters

#120 Neato-Nick closed 5 years ago
2
getDLLRegisteredRoutine issue

#119 knausb closed 5 years ago
6
Compilation flag issue

#118 knausb closed 5 years ago
2
Convert vcf with varying ploidy level

#117 V-Z opened 6 years ago
16
filter on both 'fix' and 'gt' lists

#116 tderrien closed 6 years ago
4
Can we have vcfR2genind return alleles by option/default?

#115 zkamvar closed 6 years ago
5

Previous Next