knowledgesystems pipelines-scrum issues

knowledgesystems / pipelines-scrum

Repository for tracking uncategorizable issues related to backend pipelines work

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Investigate "MUTATED" annotation for multiple records in MSK-IMPACT data_mutations_extended.txt (as of 6/21/2024)

#1344 n1zea144 opened 5 days ago
0
Add Sophia data validation checks to validation_utils_py3 script

#1343 callachennault opened 1 week ago
0
Handle CDM merge on validation error

#1342 callachennault opened 1 week ago
0
Missing BARD1 structural variant in cbioportal.mskcc.org (P-0107561-T01-IM7)

#1341 n1zea144 opened 1 week ago
0
Deploy Graphite-backed Onoctree into Production

#1340 averyniceday opened 1 week ago
0
Update Python Scripts to Work with Graphite

#1339 averyniceday opened 1 week ago
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Formalize Dev to Production Graphite Flow for Curation

#1338 averyniceday opened 1 week ago
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Upgrade Cluster to 1.22

#1337 averyniceday opened 1 week ago
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Resolve Consent Status Issue

#1336 averyniceday opened 1 week ago
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Push Existing Logs into Datadog

#1335 averyniceday opened 1 week ago
0
Saml2Auth Authentication Issue

#1334 averyniceday opened 1 week ago
1
Investigate if we lost new CDM data elements for patients (or confirm they were never backfilled)

#1333 n1zea144 closed 2 weeks ago
0
Monitor and detect when MSK Portal is "empty" when cache clearing fails to complete.

#1332 n1zea144 opened 2 weeks ago
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Investigate missing IMPACT patient/sample data

#1331 n1zea144 opened 3 weeks ago
0
Generate Sophia Upper GI cohort by 6/21

#1330 callachennault closed 1 week ago
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oncotree is java21 compatible

#1329 sheridancbio opened 1 month ago
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oncotree integration-tests are running for continuous integration

#1328 sheridancbio opened 1 month ago
0
data discrepancies corrected in graphite databases

#1327 sheridancbio opened 1 month ago
2
oncotree server PR (#263) revised and merged

#1326 sheridancbio opened 1 month ago
0
Add check to AZ delivery that looks for missing gene panels

#1325 callachennault closed 1 week ago
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Investigate SV gene frequency > 100% in AZ delivery

#1324 callachennault closed 2 weeks ago
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Break NCI-CRDC Pipeline into Smaller DAGS

#1323 averyniceday opened 1 month ago
0
Convert NCI-CRDC DAGS to use Kubernetes Executor

#1322 averyniceday opened 1 month ago
0
NCI-CRDC Pipeline Loaded into Dev Airflow

#1321 averyniceday closed 2 weeks ago
0
Implement/Test Celery Executor

#1320 averyniceday opened 1 month ago
0
CDM Data Release 2 - Clinical Attr. Metadata Elements updated

#1319 averyniceday closed 2 weeks ago
0
Full Run of CDM Pipeline for June Release

#1318 averyniceday closed 1 week ago
0
Use Trigger for S3 Pull/Push + CDM Job

#1317 averyniceday closed 1 week ago
1
Backfill SEQ_DATE values for all sophia cohorts

#1316 callachennault closed 1 week ago
0
Setup SSH tunnel to run in OncoTree docker container

#1315 callachennault closed 1 month ago
0
Make data in graphite match topbraid

#1314 callachennault opened 1 month ago
0
purge history for msk-impact in github.mskcc.org

#1313 sheridancbio closed 1 month ago
1
Implement Timeline Data for NCI Pipeline

#1312 averyniceday closed 2 weeks ago
0
Fix CVR Logic Bug for Seq Date Backfill

#1311 averyniceday closed 1 month ago
0
Decide on Pre/Production Server Usage

#1310 averyniceday closed 1 month ago
0
Run CDM Job Inside Dev Airflow

#1309 averyniceday opened 1 month ago
0
Update Permission Boundaries for Production AWS Account

#1308 averyniceday closed 1 week ago
0
Monitor TopBraid - Update CDD Once Stable

#1307 averyniceday opened 1 month ago
0
Deliver Sophia Ovarian Cohort

#1306 averyniceday closed 1 month ago
0
Recover from TopBraid Outage

#1305 averyniceday closed 1 month ago
0
Automate Truststore Update

#1304 averyniceday opened 1 month ago
0
Deploy Sample Coverage/CT Code

#1303 averyniceday closed 1 month ago
1
Update Truststore with Latest GENIE GN Cert and Distribute

#1302 averyniceday closed 1 month ago
0
Reenable Cache Reset from New GENIE Node

#1301 averyniceday closed 1 month ago
2
Deliver ACCESS146 Gene Panel to AZ

#1300 averyniceday closed 1 month ago
0
Check for Missing Assays in CVR Fetcher

#1299 averyniceday closed 1 month ago
1
Switch our Sequenced Samples Header with What's in Queue and not Masterlist

#1298 averyniceday opened 2 months ago
0
Deploy Cache Clearing from V2 Account

#1297 averyniceday closed 2 months ago
0
Complete Databricks Training Course

#1296 averyniceday opened 2 months ago
0
Coordinate Data Release for CRDC TCGA and CPTAC

#1295 averyniceday opened 2 months ago
0